Gene annotation
Transcriptome id Sobic.003G169200.1
Synonym Sb03g017610
Functional annotation chloroplast ATP synthase a chain precursor, putative, expressed
UniProt Q35781 , Q35782 , Q09EJ8 , C5XLA2 , A1E9R8
Pfam PF00119
Panther DB PTHR11410
NCBI CDD KOG4665; ATP synthase F0 subunit 6 and related proteins
KEGG Orthology K02108; ATPF0A, F-type H+-transporting ATPase subunit a
Gene Ontology GO:0015986; ATP synthesis coupled proton transport GO:0015078proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR ATCG00150 : ATPase, F0 complex, subunit A protein
RAP-DB (Rice) LOC_Os10g38276.1 : chloroplast ATP synthase a chain precursor, putative, expressed
MaizeGDB (Corn) Zm00025a057619 , Zm00025a044832 , Zm00025a057590 , Zm00025a041314
Brachypodium KQK12761 , PNT70413 , KQJ97800 , PNT75852 , KQJ84935
Barley HORVU5Hr1G067560.1 , HORVU7Hr1G005040.7 , HORVU7Hr1G005040.4 , HORVU7Hr1G005040.2 , HORVU7Hr1G005040.3 , HORVU0Hr1G036790.1 , HORVU4Hr1G045350.1 , HORVU6Hr1G049150.1 , HORVU6Hr1G049150.2 , HORVU0Hr1G028530.1 , HORVU0Hr1G033900.1 , HORVU0Hr1G024810.2 , HORVU0Hr1G024810.1 , AGP50749 , HORVU4Hr1G045380.6 , HORVU4Hr1G045380.7 , HORVU4Hr1G045380.4 , HORVU4Hr1G045380.3 , HORVU0Hr1G032740.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I
2 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -
3 Sobic.003G172600 - -
4 Sobic.005G139900 chloroplast 30S ribosomal protein S7, putative, expressed K02992: RP-S7, MRPS7, small subunit ribosomal protein S7
5 Sobic.K032300 uncharacterized protein ycf72, putative -
6 Sobic.001G394532 - K02110: ATPF0C, F-type H+-transporting ATPase subunit c
7 Sobic.003G173116 - K02724: photosystem II PsbZ protein
8 Sobic.001G530201 - -
9 Sobic.003G159101 - -
10 Sobic.009G174150 - -
11 Sobic.006G183100 RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed K10755: replication factor C subunit 2/4
12 Sobic.006G124800 - -
13 Sobic.006G124700 chloroplast 30S ribosomal protein S8, putative, expressed K02994: RP-S8, small subunit ribosomal protein S8
14 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
15 Sobic.004G303433 - K02950: RP-S12, MRPS12, small subunit ribosomal protein S12
16 Sobic.003G117850 - -
17 Sobic.003G172500 - -
18 Sobic.001G535850 - -
19 Sobic.003G053100 - -
20 Sobic.002G270733 - -


Gene co-expression network
sample Sobic003G169200 Sobic003G169200 Sobic001G230050 Sobic001G230050 Sobic003G169200--Sobic001G230050 Sobic010G206600 Sobic010G206600 Sobic003G169200--Sobic010G206600 Sobic003G172600 Sobic003G172600 Sobic003G169200--Sobic003G172600 Sobic005G139900 Sobic005G139900 Sobic003G169200--Sobic005G139900 SobicK032300 SobicK032300 Sobic003G169200--SobicK032300 Sobic001G394532 Sobic001G394532 Sobic003G169200--Sobic001G394532 Sobic003G173116 Sobic003G173116 Sobic003G169200--Sobic003G173116 Sobic001G530201 Sobic001G530201 Sobic003G169200--Sobic001G530201 Sobic003G159101 Sobic003G159101 Sobic003G169200--Sobic003G159101 Sobic001G230050--SobicK032300 Sobic001G230050--Sobic003G169200 Sobic001G230050--Sobic010G206600 Sobic001G230050--Sobic003G172600 Sobic001G230050--Sobic003G173116 Sobic001G230050--Sobic001G394532 Sobic006G183100 Sobic006G183100 Sobic001G230050--Sobic006G183100 Sobic003G172500 Sobic003G172500 Sobic001G230050--Sobic003G172500 Sobic006G124700 Sobic006G124700 Sobic001G230050--Sobic006G124700 Sobic010G206600--Sobic001G394532 Sobic010G206600--Sobic001G230050 Sobic010G206600--Sobic003G169200 Sobic010G206600--SobicK032300 Sobic010G206600--Sobic006G183100 Sobic010G206600--Sobic006G124700 Sobic010G206600--Sobic003G172500 Sobic010G206600--Sobic005G139900 Sobic009G174150 Sobic009G174150 Sobic010G206600--Sobic009G174150 Sobic003G172600--Sobic001G230050 Sobic006G124800 Sobic006G124800 Sobic003G172600--Sobic006G124800 Sobic003G172600--Sobic003G169200 Sobic003G172600--SobicK032300 Sobic003G172600--Sobic003G173116 Sobic003G172600--Sobic005G139900 Sobic003G117850 Sobic003G117850 Sobic003G172600--Sobic003G117850 Sobic003G172600--Sobic010G206600 Sobic003G172600--Sobic001G530201 Sobic005G139900--Sobic003G169200 Sobic005G139900--Sobic003G173116 Sobic004G303433 Sobic004G303433 Sobic005G139900--Sobic004G303433 Sobic001G535850 Sobic001G535850 Sobic005G139900--Sobic001G535850 Sobic003G053100 Sobic003G053100 Sobic005G139900--Sobic003G053100 Sobic005G139900--Sobic010G206600 Sobic005G139900--Sobic003G172600 Sobic005G139900--Sobic001G530201 Sobic005G139900--Sobic001G230050 SobicK032300--Sobic001G230050 SobicK032300--Sobic003G172500 SobicK032300--Sobic006G124700 SobicK032300--Sobic010G206600 Sobic009G123100 Sobic009G123100 SobicK032300--Sobic009G123100 SobicK032300--Sobic006G183100 Sobic010G052866 Sobic010G052866 SobicK032300--Sobic010G052866 SobicK032300--Sobic006G124800 SobicK032300--Sobic003G169200 Sobic001G394532--Sobic010G206600 Sobic001G394532--Sobic001G230050 Sobic001G394532--Sobic003G169200 Sobic001G394532--SobicK032300 Sobic001G394532--Sobic001G535850 Sobic001G394532--Sobic005G139900 Sobic001G394532--Sobic001G530201 Sobic001G394532--Sobic006G183100 Sobic001G394532--Sobic009G174150 Sobic003G173116--Sobic003G159101 Sobic003G173116--Sobic001G230050 Sobic003G173116--Sobic005G139900 Sobic003G173116--Sobic009G174150 Sobic003G173116--Sobic003G169200 Sobic003G173116--Sobic003G172600 Sobic003G173116--Sobic001G535850 Sobic003G173116--Sobic003G053100 Sobic003G173116--Sobic010G206600 Sobic001G530201--Sobic003G169200 Sobic001G530201--Sobic005G139900 Sobic002G083332 Sobic002G083332 Sobic001G530201--Sobic002G083332 Sobic001G530201--Sobic001G394532 Sobic001G530201--Sobic010G206600 Sobic001G530201--Sobic003G172600 Sobic001G530201--Sobic001G230050 Sobic001G182700 Sobic001G182700 Sobic001G530201--Sobic001G182700 Sobic001G530201--SobicK032300 Sobic003G159101--Sobic003G173116 Sobic005G036450 Sobic005G036450 Sobic003G159101--Sobic005G036450 Sobic003G159101--Sobic003G169200 Sobic003G159101--Sobic005G139900 Sobic003G159101--Sobic004G303433 Sobic003G159101--Sobic001G230050 Sobic003G159101--Sobic009G174150 Sobic003G159101--Sobic001G535850 Sobic003G159101--Sobic003G053100
Octagon: transcription factors


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