Gene annotation
Transcriptome id Sobic.003G173116.1
Synonym -
Functional annotation -
UniProt D6MJ36 , C5XLG4 , A1E9R1
Pfam PF01737
Panther DB PTHR34971 PTHR34971:SF2
NCBI CDD -
KEGG Orthology K02724; photosystem II PsbZ protein
Gene Ontology GO:0015979; photosynthesis GO:0009539photosystem II reaction center GO:0009523photosystem II


Orthologs (automatic annotation)
TAIR ATCG00300 : YCF9
RAP-DB (Rice) LOC_Os02g24628.1 : photosystem II reaction center protein Z, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ96823 , PNT78353
Barley AGP50742 , HORVU0Hr1G024750.1 , HORVU0Hr1G037300.1 , HORVU0Hr1G028590.1 , HORVU5Hr1G004570.1 , HORVU0Hr1G029680.1 , HORVU4Hr1G066670.1 , HORVU0Hr1G036740.1 , HORVU0Hr1G033860.1 , HORVU0Hr1G024440.1 , HORVU2Hr1G121780.1 , HORVU0Hr1G034660.1 , HORVU2Hr1G062000.1
Wheat TraesCS5D02G007800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G159101 - -
2 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I
3 Sobic.005G139900 chloroplast 30S ribosomal protein S7, putative, expressed K02992: RP-S7, MRPS7, small subunit ribosomal protein S7
4 Sobic.009G174150 - -
5 Sobic.003G169200 chloroplast ATP synthase a chain precursor, putative, expressed K02108: ATPF0A, F-type H+-transporting ATPase subunit a
6 Sobic.003G172600 - -
7 Sobic.001G535850 - -
8 Sobic.003G053100 - -
9 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -
10 Sobic.003G117850 - -
11 Sobic.001G022700 cytochrome P450, putative, expressed -
12 Sobic.005G139750 - -
13 Sobic.005G104900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G394532 - K02110: ATPF0C, F-type H+-transporting ATPase subunit c
15 Sobic.K032300 uncharacterized protein ycf72, putative -
16 Sobic.004G303433 - K02950: RP-S12, MRPS12, small subunit ribosomal protein S12
17 Sobic.006G183100 RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed K10755: replication factor C subunit 2/4
18 Sobic.006G124800 - -
19 Sobic.005G036450 - -
20 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23


Gene co-expression network
sample Sobic003G173116 Sobic003G173116 Sobic003G159101 Sobic003G159101 Sobic003G173116--Sobic003G159101 Sobic001G230050 Sobic001G230050 Sobic003G173116--Sobic001G230050 Sobic005G139900 Sobic005G139900 Sobic003G173116--Sobic005G139900 Sobic009G174150 Sobic009G174150 Sobic003G173116--Sobic009G174150 Sobic003G169200 Sobic003G169200 Sobic003G173116--Sobic003G169200 Sobic003G172600 Sobic003G172600 Sobic003G173116--Sobic003G172600 Sobic001G535850 Sobic001G535850 Sobic003G173116--Sobic001G535850 Sobic003G053100 Sobic003G053100 Sobic003G173116--Sobic003G053100 Sobic010G206600 Sobic010G206600 Sobic003G173116--Sobic010G206600 Sobic003G159101--Sobic003G173116 Sobic005G036450 Sobic005G036450 Sobic003G159101--Sobic005G036450 Sobic003G159101--Sobic003G169200 Sobic003G159101--Sobic005G139900 Sobic004G303433 Sobic004G303433 Sobic003G159101--Sobic004G303433 Sobic003G159101--Sobic001G230050 Sobic003G159101--Sobic009G174150 Sobic003G159101--Sobic001G535850 Sobic003G159101--Sobic003G053100 SobicK032300 SobicK032300 Sobic001G230050--SobicK032300 Sobic001G230050--Sobic003G169200 Sobic001G230050--Sobic010G206600 Sobic001G230050--Sobic003G172600 Sobic001G230050--Sobic003G173116 Sobic001G394532 Sobic001G394532 Sobic001G230050--Sobic001G394532 Sobic006G183100 Sobic006G183100 Sobic001G230050--Sobic006G183100 Sobic003G172500 Sobic003G172500 Sobic001G230050--Sobic003G172500 Sobic006G124700 Sobic006G124700 Sobic001G230050--Sobic006G124700 Sobic005G139900--Sobic003G169200 Sobic005G139900--Sobic003G173116 Sobic005G139900--Sobic004G303433 Sobic005G139900--Sobic001G535850 Sobic005G139900--Sobic003G053100 Sobic005G139900--Sobic010G206600 Sobic005G139900--Sobic003G172600 Sobic001G530201 Sobic001G530201 Sobic005G139900--Sobic001G530201 Sobic005G139900--Sobic001G230050 Sobic009G174150--Sobic003G173116 Sobic009G174150--Sobic001G230050 Sobic009G174150--Sobic010G206600 Sobic009G174150--Sobic003G169200 Sobic009G174150--Sobic001G394532 Sobic009G174150--Sobic003G159101 Sobic010G052866 Sobic010G052866 Sobic009G174150--Sobic010G052866 Sobic009G174150--Sobic001G535850 Sobic009G174150--SobicK032300 Sobic003G169200--Sobic001G230050 Sobic003G169200--Sobic010G206600 Sobic003G169200--Sobic003G172600 Sobic003G169200--Sobic005G139900 Sobic003G169200--SobicK032300 Sobic003G169200--Sobic001G394532 Sobic003G169200--Sobic003G173116 Sobic003G169200--Sobic001G530201 Sobic003G169200--Sobic003G159101 Sobic003G172600--Sobic001G230050 Sobic006G124800 Sobic006G124800 Sobic003G172600--Sobic006G124800 Sobic003G172600--Sobic003G169200 Sobic003G172600--SobicK032300 Sobic003G172600--Sobic003G173116 Sobic003G172600--Sobic005G139900 Sobic003G117850 Sobic003G117850 Sobic003G172600--Sobic003G117850 Sobic003G172600--Sobic010G206600 Sobic003G172600--Sobic001G530201 Sobic003G286450 Sobic003G286450 Sobic001G535850--Sobic003G286450 Sobic001G535850--Sobic005G139900 Sobic001G535850--Sobic004G303433 Sobic001G535850--Sobic003G173116 Sobic001G535850--Sobic001G394532 Sobic001G535850--Sobic010G206600 Sobic005G139750 Sobic005G139750 Sobic001G535850--Sobic005G139750 Sobic001G154000 Sobic001G154000 Sobic001G535850--Sobic001G154000 Sobic005G104900 Sobic005G104900 Sobic001G535850--Sobic005G104900 Sobic003G053100--Sobic005G139900 Sobic003G053100--Sobic003G173116 Sobic003G053100--Sobic005G104900 Sobic003G053100--Sobic003G172600 Sobic003G053100--Sobic003G159101 Sobic003G053100--Sobic003G169200 Sobic003G053100--Sobic001G535850 Sobic003G053100--Sobic004G303433 Sobic003G053100--Sobic001G230050 Sobic010G206600--Sobic001G394532 Sobic010G206600--Sobic001G230050 Sobic010G206600--Sobic003G169200 Sobic010G206600--SobicK032300 Sobic010G206600--Sobic006G183100 Sobic010G206600--Sobic006G124700 Sobic010G206600--Sobic003G172500 Sobic010G206600--Sobic005G139900 Sobic010G206600--Sobic009G174150
Octagon: transcription factors


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