Gene annotation
Transcriptome id Sobic.006G183100.1
Synonym RFC2, Sb06g025740
Functional annotation RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed
UniProt C5YE32
Pfam PF00004 PF08542
Panther DB PTHR11669 PTHR11669:SF5
NCBI CDD -
KEGG Orthology K10755; replication factor C subunit 2/4
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G63160 : replication factor C 2
RAP-DB (Rice) LOC_Os04g48060.1 : RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed
MaizeGDB (Corn) Zm00025a018793 , Zm00025a056775
Brachypodium KQJ84099
Barley HORVU2Hr1G095220.6 , HORVU2Hr1G095220.7 , HORVU2Hr1G095220.4 , HORVU2Hr1G095220.5 , HORVU2Hr1G095220.2 , HORVU2Hr1G095220.3 , HORVU2Hr1G095220.1 , HORVU2Hr1G095220.8 , HORVU6Hr1G056170.3 , HORVU6Hr1G056170.2 , HORVU6Hr1G056170.1
Wheat TraesCS2B02G419300 , TraesCS2A02G401300 , TraesCS2B02G419300
Populus -


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cDNA sequences
Sobic.006G183100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.K032300 uncharacterized protein ycf72, putative -
2 Sobic.006G124700 chloroplast 30S ribosomal protein S8, putative, expressed K02994: RP-S8, small subunit ribosomal protein S8
3 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I
4 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -
5 Sobic.003G172500 - -
6 Sobic.009G123100 - K02710: photosystem II PsbI protein
K02712: photosystem II PsbK protein
7 Sobic.001G394532 - K02110: ATPF0C, F-type H+-transporting ATPase subunit c
8 Sobic.006G124800 - -
9 Sobic.007G145801 - K02712: photosystem II PsbK protein
10 Sobic.003G172600 - -
11 Sobic.003G169200 chloroplast ATP synthase a chain precursor, putative, expressed K02108: ATPF0A, F-type H+-transporting ATPase subunit a
12 Sobic.003G169100 photosystem II P680 chlorophyll A apoprotein, putative, expressed K02704: photosystem II CP47 chlorophyll apoprotein
13 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
14 Sobic.007G065000 proton-dependent oligopeptide transport, putative, expressed -
15 Sobic.010G139200 photosystem II P680 chlorophyll A apoprotein, putative, expressed -
16 Sobic.004G087050 - -
17 Sobic.005G139750 - -
18 Sobic.003G173116 - K02724: photosystem II PsbZ protein
19 Sobic.001G530201 - -
20 Sobic.009G148950 - -


Gene co-expression network
sample Sobic006G183100 Sobic006G183100 SobicK032300 SobicK032300 Sobic006G183100--SobicK032300 Sobic006G124700 Sobic006G124700 Sobic006G183100--Sobic006G124700 Sobic001G230050 Sobic001G230050 Sobic006G183100--Sobic001G230050 Sobic010G206600 Sobic010G206600 Sobic006G183100--Sobic010G206600 Sobic003G172500 Sobic003G172500 Sobic006G183100--Sobic003G172500 Sobic009G123100 Sobic009G123100 Sobic006G183100--Sobic009G123100 Sobic001G394532 Sobic001G394532 Sobic006G183100--Sobic001G394532 Sobic006G124800 Sobic006G124800 Sobic006G183100--Sobic006G124800 Sobic007G145801 Sobic007G145801 Sobic006G183100--Sobic007G145801 SobicK032300--Sobic001G230050 SobicK032300--Sobic003G172500 SobicK032300--Sobic006G124700 SobicK032300--Sobic010G206600 SobicK032300--Sobic009G123100 SobicK032300--Sobic006G183100 Sobic010G052866 Sobic010G052866 SobicK032300--Sobic010G052866 SobicK032300--Sobic006G124800 Sobic003G169200 Sobic003G169200 SobicK032300--Sobic003G169200 Sobic006G124700--SobicK032300 Sobic006G124700--Sobic003G172500 Sobic006G124700--Sobic006G183100 Sobic006G124700--Sobic009G123100 Sobic006G124700--Sobic001G230050 Sobic006G124700--Sobic010G206600 Sobic006G124700--Sobic010G052866 Sobic004G087050 Sobic004G087050 Sobic006G124700--Sobic004G087050 Sobic010G139200 Sobic010G139200 Sobic006G124700--Sobic010G139200 Sobic001G230050--SobicK032300 Sobic001G230050--Sobic003G169200 Sobic001G230050--Sobic010G206600 Sobic003G172600 Sobic003G172600 Sobic001G230050--Sobic003G172600 Sobic003G173116 Sobic003G173116 Sobic001G230050--Sobic003G173116 Sobic001G230050--Sobic001G394532 Sobic001G230050--Sobic006G183100 Sobic001G230050--Sobic003G172500 Sobic001G230050--Sobic006G124700 Sobic010G206600--Sobic001G394532 Sobic010G206600--Sobic001G230050 Sobic010G206600--Sobic003G169200 Sobic010G206600--SobicK032300 Sobic010G206600--Sobic006G183100 Sobic010G206600--Sobic006G124700 Sobic010G206600--Sobic003G172500 Sobic005G139900 Sobic005G139900 Sobic010G206600--Sobic005G139900 Sobic009G174150 Sobic009G174150 Sobic010G206600--Sobic009G174150 Sobic003G172500--Sobic010G052866 Sobic003G172500--Sobic004G087050 Sobic003G172500--Sobic009G123100 Sobic003G172500--SobicK032300 Sobic003G172500--Sobic010G139200 Sobic005G110493 Sobic005G110493 Sobic003G172500--Sobic005G110493 Sobic003G172500--Sobic006G124700 Sobic003G168425 Sobic003G168425 Sobic003G172500--Sobic003G168425 Sobic003G169300 Sobic003G169300 Sobic003G172500--Sobic003G169300 Sobic009G123100--Sobic003G172500 Sobic009G148950 Sobic009G148950 Sobic009G123100--Sobic009G148950 Sobic009G123100--Sobic004G087050 Sobic006G057050 Sobic006G057050 Sobic009G123100--Sobic006G057050 Sobic009G123100--SobicK032300 Sobic009G123100--Sobic007G145801 Sobic009G123100--Sobic006G124700 Sobic009G123100--Sobic010G139200 Sobic004G337850 Sobic004G337850 Sobic009G123100--Sobic004G337850 Sobic001G394532--Sobic010G206600 Sobic001G394532--Sobic001G230050 Sobic001G394532--Sobic003G169200 Sobic001G394532--SobicK032300 Sobic001G535850 Sobic001G535850 Sobic001G394532--Sobic001G535850 Sobic001G394532--Sobic005G139900 Sobic001G530201 Sobic001G530201 Sobic001G394532--Sobic001G530201 Sobic001G394532--Sobic006G183100 Sobic001G394532--Sobic009G174150 Sobic006G124800--Sobic003G172600 Sobic006G124800--SobicK032300 Sobic006G124800--Sobic001G230050 Sobic006G124800--Sobic007G145801 Sobic006G124800--Sobic006G183100 Sobic006G124800--Sobic009G123100 Sobic006G124800--Sobic010G206600 Sobic006G124800--Sobic006G124700 Sobic006G124800--Sobic003G169200 Sobic007G145801--Sobic009G123100 Sobic003G169100 Sobic003G169100 Sobic007G145801--Sobic003G169100 Sobic005G139750 Sobic005G139750 Sobic007G145801--Sobic005G139750 Sobic007G145801--Sobic006G124800 Sobic007G145801--SobicK032300 Sobic007G145801--Sobic010G206600 Sobic007G145801--Sobic006G183100 Sobic007G145801--Sobic009G148950 Sobic007G145801--Sobic006G124700
Octagon: transcription factors


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