Gene annotation
Transcriptome id Sobic.003G169100.1
Synonym Sb03g017600
Functional annotation photosystem II P680 chlorophyll A apoprotein, putative, expressed
UniProt A0A109NDC0 , C5XLA1 , A1E9V0
Pfam PF00421
Panther DB PTHR33180 PTHR33180:SF8
NCBI CDD -
KEGG Orthology K02704; photosystem II CP47 chlorophyll apoprotein
Gene Ontology GO:0016168; chlorophyll binding GO:0016020membrane GO:0009767photosynthetic electron transport chain GO:0009521photosystem


Orthologs (automatic annotation)
TAIR ATCG00680 : photosystem II reaction center protein B
RAP-DB (Rice) LOC_Os06g39708.1 : photosystem II P680 chlorophyll A apoprotein, putative, expressed
MaizeGDB (Corn) Zm00025a057835 , Zm00025a057579 , Zm00025a057666 , Zm00025a057608 , Zm00025a057693
Brachypodium KQK18187 , KQJ96461 , KQK12113 , PNT63523 , KQJ84939 , PNT67426 , PNT63098 , KQJ82569 , KQK12741
Barley HORVU0Hr1G029910.1 , AGP50780 , HORVU2Hr1G080040.1 , HORVU2Hr1G084020.1 , HORVU3Hr1G004410.1 , HORVU0Hr1G034250.1 , HORVU0Hr1G034250.2 , HORVU7Hr1G022430.1 , HORVU6Hr1G049390.7 , HORVU6Hr1G049390.6 , HORVU6Hr1G049390.5 , HORVU6Hr1G049390.4 , HORVU6Hr1G049390.3 , HORVU6Hr1G049390.2 , HORVU6Hr1G049390.1 , HORVU5Hr1G065050.5 , HORVU5Hr1G065050.4 , HORVU5Hr1G065050.7 , HORVU5Hr1G065050.6 , HORVU5Hr1G065050.1 , HORVU5Hr1G065050.3 , HORVU5Hr1G065050.2 , HORVU1Hr1G023940.1 , HORVU1Hr1G039760.2 , HORVU1Hr1G039760.3 , HORVU1Hr1G039760.1 , HORVU0Hr1G029910.2 , HORVU3Hr1G027570.2 , HORVU3Hr1G027570.3 , HORVU3Hr1G027570.1 , HORVU1Hr1G003030.1
Wheat TraesCS3D02G053400 , TraesCS1D02G182600 , TraesCS7B02G109800
Populus PNT08271 , PNS96824 , PNT42003 , PNT08266 , PNT12914


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G169000 - K02718: photosystem II PsbT protein
2 Sobic.007G065000 proton-dependent oligopeptide transport, putative, expressed -
3 Sobic.007G145801 - K02712: photosystem II PsbK protein
4 Sobic.009G123100 - K02710: photosystem II PsbI protein
K02712: photosystem II PsbK protein
5 Sobic.003G168200 - -
6 Sobic.K032300 uncharacterized protein ycf72, putative -
7 Sobic.007G149200 "DEP1/GGC2(Ortholog in rice:Huang et al., 2009(PubMedID : 31659905)@keratin-associated protein 5-4, putative, expressed -
8 Sobic.003G172500 - -
9 Sobic.010G139200 photosystem II P680 chlorophyll A apoprotein, putative, expressed -
10 Sobic.003G369533 - -
11 Sobic.006G124700 chloroplast 30S ribosomal protein S8, putative, expressed K02994: RP-S8, small subunit ribosomal protein S8
12 Sobic.004G087050 - -
13 Sobic.006G124800 - -
14 Sobic.006G183100 RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed K10755: replication factor C subunit 2/4
15 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -
16 Sobic.003G352000 growth regulator related protein, putative, expressed -
17 Sobic.003G369566 - -
18 Sobic.K029400 conserved hypothetical protein -
19 Sobic.001G182700 disease resistance RPP13-like protein 1, putative, expressed -
20 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I


Gene co-expression network
sample Sobic003G169100 Sobic003G169100 Sobic003G169000 Sobic003G169000 Sobic003G169100--Sobic003G169000 Sobic007G065000 Sobic007G065000 Sobic003G169100--Sobic007G065000 Sobic007G145801 Sobic007G145801 Sobic003G169100--Sobic007G145801 Sobic009G123100 Sobic009G123100 Sobic003G169100--Sobic009G123100 Sobic003G168200 Sobic003G168200 Sobic003G169100--Sobic003G168200 SobicK032300 SobicK032300 Sobic003G169100--SobicK032300 Sobic007G149200 Sobic007G149200 Sobic003G169100--Sobic007G149200 Sobic003G172500 Sobic003G172500 Sobic003G169100--Sobic003G172500 Sobic010G139200 Sobic010G139200 Sobic003G169100--Sobic010G139200 Sobic003G169000--Sobic003G169100 Sobic003G169000--Sobic007G065000 Sobic003G169000--Sobic007G149200 Sobic003G352000 Sobic003G352000 Sobic003G169000--Sobic003G352000 Sobic003G369533 Sobic003G369533 Sobic003G169000--Sobic003G369533 Sobic003G169000--Sobic003G168200 SobicK029400 SobicK029400 Sobic003G169000--SobicK029400 Sobic003G169000--Sobic007G145801 Sobic003G218950 Sobic003G218950 Sobic003G169000--Sobic003G218950 Sobic010G035600 Sobic010G035600 Sobic007G065000--Sobic010G035600 Sobic007G065000--Sobic003G169000 Sobic007G065000--Sobic003G169100 Sobic007G065000--Sobic003G369533 Sobic007G065000--SobicK029400 Sobic007G065000--Sobic007G145801 Sobic010G206600 Sobic010G206600 Sobic007G065000--Sobic010G206600 Sobic007G065000--Sobic003G352000 Sobic007G065000--Sobic003G168200 Sobic007G145801--Sobic009G123100 Sobic007G145801--Sobic003G169100 Sobic005G139750 Sobic005G139750 Sobic007G145801--Sobic005G139750 Sobic006G124800 Sobic006G124800 Sobic007G145801--Sobic006G124800 Sobic007G145801--SobicK032300 Sobic007G145801--Sobic010G206600 Sobic006G183100 Sobic006G183100 Sobic007G145801--Sobic006G183100 Sobic009G148950 Sobic009G148950 Sobic007G145801--Sobic009G148950 Sobic006G124700 Sobic006G124700 Sobic007G145801--Sobic006G124700 Sobic009G123100--Sobic003G172500 Sobic009G123100--Sobic009G148950 Sobic004G087050 Sobic004G087050 Sobic009G123100--Sobic004G087050 Sobic006G057050 Sobic006G057050 Sobic009G123100--Sobic006G057050 Sobic009G123100--SobicK032300 Sobic009G123100--Sobic007G145801 Sobic009G123100--Sobic006G124700 Sobic009G123100--Sobic010G139200 Sobic004G337850 Sobic004G337850 Sobic009G123100--Sobic004G337850 Sobic003G168200--Sobic007G149200 Sobic002G278100 Sobic002G278100 Sobic003G168200--Sobic002G278100 Sobic003G168200--Sobic003G352000 Sobic003G168200--SobicK029400 Sobic003G168200--Sobic004G087050 Sobic010G201266 Sobic010G201266 Sobic003G168200--Sobic010G201266 Sobic003G168200--Sobic010G139200 Sobic008G160300 Sobic008G160300 Sobic003G168200--Sobic008G160300 Sobic003G171900 Sobic003G171900 Sobic003G168200--Sobic003G171900 Sobic001G230050 Sobic001G230050 SobicK032300--Sobic001G230050 SobicK032300--Sobic003G172500 SobicK032300--Sobic006G124700 SobicK032300--Sobic010G206600 SobicK032300--Sobic009G123100 SobicK032300--Sobic006G183100 Sobic010G052866 Sobic010G052866 SobicK032300--Sobic010G052866 SobicK032300--Sobic006G124800 Sobic003G169200 Sobic003G169200 SobicK032300--Sobic003G169200 Sobic007G149200--Sobic003G168200 Sobic007G149200--Sobic002G278100 Sobic005G116400 Sobic005G116400 Sobic007G149200--Sobic005G116400 Sobic007G149200--Sobic003G352000 Sobic007G149200--Sobic010G201266 Sobic007G149200--SobicK029400 Sobic007G149200--Sobic003G369533 Sobic007G149200--Sobic003G169000 Sobic007G149200--Sobic010G139200 Sobic003G172500--Sobic010G052866 Sobic003G172500--Sobic004G087050 Sobic003G172500--Sobic009G123100 Sobic003G172500--SobicK032300 Sobic003G172500--Sobic010G139200 Sobic005G110493 Sobic005G110493 Sobic003G172500--Sobic005G110493 Sobic003G172500--Sobic006G124700 Sobic003G168425 Sobic003G168425 Sobic003G172500--Sobic003G168425 Sobic003G169300 Sobic003G169300 Sobic003G172500--Sobic003G169300 Sobic010G139200--Sobic004G087050 Sobic010G139200--Sobic003G168425 Sobic010G139200--Sobic005G110493 Sobic010G139200--Sobic003G172500 Sobic010G139200--Sobic003G168200 Sobic004G210400 Sobic004G210400 Sobic010G139200--Sobic004G210400 Sobic010G139200--Sobic003G169300 Sobic010G139200--SobicK032300 Sobic010G139200--Sobic009G123100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.