Gene annotation
Transcriptome id Sobic.003G169000.1
Synonym
Functional annotation -
UniProt A0A1B6Q3P9 , A1E9V1
Pfam PF01405
Panther DB PTHR36411 PTHR36411:SF2
NCBI CDD -
KEGG Orthology K02718; photosystem II PsbT protein
Gene Ontology GO:0016020; membrane GO:0015979photosynthesis GO:0009539photosystem II reaction center GO:0009523photosystem II


Orthologs (automatic annotation)
TAIR ATCG00690 : photosystem II reaction center protein T
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium KQJ82563 , KQK18188 , KQK12740
Barley AGP50781
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G169100 photosystem II P680 chlorophyll A apoprotein, putative, expressed K02704: photosystem II CP47 chlorophyll apoprotein
2 Sobic.007G065000 proton-dependent oligopeptide transport, putative, expressed -
3 Sobic.007G149200 "DEP1/GGC2(Ortholog in rice:Huang et al., 2009(PubMedID : 31659905)@keratin-associated protein 5-4, putative, expressed -
4 Sobic.003G352000 growth regulator related protein, putative, expressed -
5 Sobic.003G369533 - -
6 Sobic.003G168200 - -
7 Sobic.K029400 conserved hypothetical protein -
8 Sobic.007G145801 - K02712: photosystem II PsbK protein
9 Sobic.003G218950 - -
10 Sobic.009G123100 - K02710: photosystem II PsbI protein
K02712: photosystem II PsbK protein
11 Sobic.003G369566 - -
12 Sobic.004G337850 - -
13 Sobic.006G057100 - -
14 Sobic.005G116400 apocytochrome f precursor, putative, expressed K02634: apocytochrome f
15 Sobic.010G035600 - -
16 Sobic.003G172500 - -
17 Sobic.004G087050 - -
18 Sobic.010G139200 photosystem II P680 chlorophyll A apoprotein, putative, expressed -
19 Sobic.002G278100 armadillo/beta-catenin repeat family protein, putative, expressed -
20 Sobic.006G124700 chloroplast 30S ribosomal protein S8, putative, expressed K02994: RP-S8, small subunit ribosomal protein S8


Gene co-expression network
sample Sobic003G169000 Sobic003G169000 Sobic003G169100 Sobic003G169100 Sobic003G169000--Sobic003G169100 Sobic007G065000 Sobic007G065000 Sobic003G169000--Sobic007G065000 Sobic007G149200 Sobic007G149200 Sobic003G169000--Sobic007G149200 Sobic003G352000 Sobic003G352000 Sobic003G169000--Sobic003G352000 Sobic003G369533 Sobic003G369533 Sobic003G169000--Sobic003G369533 Sobic003G168200 Sobic003G168200 Sobic003G169000--Sobic003G168200 SobicK029400 SobicK029400 Sobic003G169000--SobicK029400 Sobic007G145801 Sobic007G145801 Sobic003G169000--Sobic007G145801 Sobic003G218950 Sobic003G218950 Sobic003G169000--Sobic003G218950 Sobic003G169100--Sobic003G169000 Sobic003G169100--Sobic007G065000 Sobic003G169100--Sobic007G145801 Sobic009G123100 Sobic009G123100 Sobic003G169100--Sobic009G123100 Sobic003G169100--Sobic003G168200 SobicK032300 SobicK032300 Sobic003G169100--SobicK032300 Sobic003G169100--Sobic007G149200 Sobic003G172500 Sobic003G172500 Sobic003G169100--Sobic003G172500 Sobic010G139200 Sobic010G139200 Sobic003G169100--Sobic010G139200 Sobic010G035600 Sobic010G035600 Sobic007G065000--Sobic010G035600 Sobic007G065000--Sobic003G169000 Sobic007G065000--Sobic003G169100 Sobic007G065000--Sobic003G369533 Sobic007G065000--SobicK029400 Sobic007G065000--Sobic007G145801 Sobic010G206600 Sobic010G206600 Sobic007G065000--Sobic010G206600 Sobic007G065000--Sobic003G352000 Sobic007G065000--Sobic003G168200 Sobic007G149200--Sobic003G168200 Sobic002G278100 Sobic002G278100 Sobic007G149200--Sobic002G278100 Sobic005G116400 Sobic005G116400 Sobic007G149200--Sobic005G116400 Sobic007G149200--Sobic003G352000 Sobic010G201266 Sobic010G201266 Sobic007G149200--Sobic010G201266 Sobic007G149200--SobicK029400 Sobic007G149200--Sobic003G369533 Sobic007G149200--Sobic003G169000 Sobic007G149200--Sobic010G139200 Sobic003G352000--SobicK029400 Sobic003G352000--Sobic003G168200 Sobic003G352000--Sobic007G149200 Sobic003G352000--Sobic002G278100 Sobic003G352000--Sobic010G201266 Sobic006G057100 Sobic006G057100 Sobic003G352000--Sobic006G057100 Sobic003G172400 Sobic003G172400 Sobic003G352000--Sobic003G172400 Sobic003G352000--Sobic003G369533 Sobic003G352000--Sobic003G218950 Sobic003G369533--SobicK029400 Sobic003G369533--Sobic003G218950 Sobic003G369533--Sobic003G168200 Sobic003G369533--Sobic007G149200 Sobic003G369533--Sobic005G116400 Sobic003G369533--Sobic007G065000 Sobic003G369533--Sobic003G352000 Sobic003G369566 Sobic003G369566 Sobic003G369533--Sobic003G369566 Sobic003G369533--Sobic003G169000 Sobic003G168200--Sobic007G149200 Sobic003G168200--Sobic002G278100 Sobic003G168200--Sobic003G352000 Sobic003G168200--SobicK029400 Sobic004G087050 Sobic004G087050 Sobic003G168200--Sobic004G087050 Sobic003G168200--Sobic010G201266 Sobic003G168200--Sobic010G139200 Sobic008G160300 Sobic008G160300 Sobic003G168200--Sobic008G160300 Sobic003G171900 Sobic003G171900 Sobic003G168200--Sobic003G171900 SobicK029400--Sobic003G352000 SobicK029400--Sobic003G168200 SobicK029400--Sobic002G278100 SobicK029400--Sobic003G369533 SobicK029400--Sobic010G201266 SobicK029400--Sobic007G149200 SobicK029400--Sobic003G172400 SobicK029400--Sobic005G116400 SobicK029400--Sobic008G160300 Sobic007G145801--Sobic009G123100 Sobic007G145801--Sobic003G169100 Sobic005G139750 Sobic005G139750 Sobic007G145801--Sobic005G139750 Sobic006G124800 Sobic006G124800 Sobic007G145801--Sobic006G124800 Sobic007G145801--SobicK032300 Sobic007G145801--Sobic010G206600 Sobic006G183100 Sobic006G183100 Sobic007G145801--Sobic006G183100 Sobic009G148950 Sobic009G148950 Sobic007G145801--Sobic009G148950 Sobic006G124700 Sobic006G124700 Sobic007G145801--Sobic006G124700 Sobic003G218950--Sobic006G057100 Sobic003G218950--Sobic003G369533 Sobic003G218950--Sobic003G352000 Sobic003G218950--SobicK029400 Sobic006G131700 Sobic006G131700 Sobic003G218950--Sobic006G131700 Sobic002G165200 Sobic002G165200 Sobic003G218950--Sobic002G165200 Sobic007G085900 Sobic007G085900 Sobic003G218950--Sobic007G085900 Sobic003G113100 Sobic003G113100 Sobic003G218950--Sobic003G113100 Sobic003G218950--Sobic003G169000
Octagon: transcription factors


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