Gene annotation
Transcriptome id Sobic.005G116400.1
Synonym
Functional annotation apocytochrome f precursor, putative, expressed
UniProt A0A1B6PRT0 , A1E9T7
Pfam PF16639
Panther DB PTHR33288 PTHR33288:SF3
NCBI CDD -
KEGG Orthology K02634; apocytochrome f
Gene Ontology -


Orthologs (automatic annotation)
TAIR ATCG00540 : photosynthetic electron transfer A
RAP-DB (Rice) LOC_Os02g24596.1 : apocytochrome f precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G201266 - K05573: NAD(P)H-quinone oxidoreductase subunit 2
K02992: RP-S7, MRPS7, small subunit ribosomal protein S7
2 Sobic.007G149200 "DEP1/GGC2(Ortholog in rice:Huang et al., 2009(PubMedID : 31659905)@keratin-associated protein 5-4, putative, expressed -
3 Sobic.002G278100 armadillo/beta-catenin repeat family protein, putative, expressed -
4 Sobic.003G168200 - -
5 Sobic.003G369533 - -
6 Sobic.K029400 conserved hypothetical protein -
7 Sobic.003G352000 growth regulator related protein, putative, expressed -
8 Sobic.010G107601 - -
9 Sobic.007G141650 - -
10 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L
11 Sobic.003G171900 - -
12 Sobic.005G096450 - -
13 Sobic.003G172400 conserved hypothetical protein -
14 Sobic.003G369566 - -
15 Sobic.010G139200 photosystem II P680 chlorophyll A apoprotein, putative, expressed -
16 Sobic.005G167100 - -
17 Sobic.010G225400 expressed protein -
18 Sobic.004G087050 - -
19 Sobic.003G169000 - K02718: photosystem II PsbT protein
20 Sobic.003G169100 photosystem II P680 chlorophyll A apoprotein, putative, expressed K02704: photosystem II CP47 chlorophyll apoprotein


Gene co-expression network
sample Sobic005G116400 Sobic005G116400 Sobic010G201266 Sobic010G201266 Sobic005G116400--Sobic010G201266 Sobic007G149200 Sobic007G149200 Sobic005G116400--Sobic007G149200 Sobic002G278100 Sobic002G278100 Sobic005G116400--Sobic002G278100 Sobic003G168200 Sobic003G168200 Sobic005G116400--Sobic003G168200 Sobic003G369533 Sobic003G369533 Sobic005G116400--Sobic003G369533 SobicK029400 SobicK029400 Sobic005G116400--SobicK029400 Sobic003G352000 Sobic003G352000 Sobic005G116400--Sobic003G352000 Sobic010G107601 Sobic010G107601 Sobic005G116400--Sobic010G107601 Sobic007G141650 Sobic007G141650 Sobic005G116400--Sobic007G141650 Sobic010G201266--Sobic002G278100 Sobic010G201266--Sobic005G116400 Sobic010G201266--Sobic010G107601 Sobic008G160300 Sobic008G160300 Sobic010G201266--Sobic008G160300 Sobic003G172400 Sobic003G172400 Sobic010G201266--Sobic003G172400 Sobic003G171900 Sobic003G171900 Sobic010G201266--Sobic003G171900 Sobic010G201266--Sobic003G168200 Sobic010G201266--Sobic007G149200 Sobic010G201266--Sobic007G141650 Sobic007G149200--Sobic003G168200 Sobic007G149200--Sobic002G278100 Sobic007G149200--Sobic005G116400 Sobic007G149200--Sobic003G352000 Sobic007G149200--Sobic010G201266 Sobic007G149200--SobicK029400 Sobic007G149200--Sobic003G369533 Sobic003G169000 Sobic003G169000 Sobic007G149200--Sobic003G169000 Sobic010G139200 Sobic010G139200 Sobic007G149200--Sobic010G139200 Sobic002G278100--Sobic010G201266 Sobic002G278100--Sobic008G160300 Sobic002G278100--Sobic003G168200 Sobic002G278100--Sobic003G172400 Sobic002G278100--Sobic003G171900 Sobic002G278100--Sobic007G149200 Sobic002G278100--Sobic010G107601 Sobic002G278100--Sobic007G141650 Sobic002G278100--Sobic005G116400 Sobic003G168200--Sobic007G149200 Sobic003G168200--Sobic002G278100 Sobic003G168200--Sobic003G352000 Sobic003G168200--SobicK029400 Sobic004G087050 Sobic004G087050 Sobic003G168200--Sobic004G087050 Sobic003G168200--Sobic010G201266 Sobic003G168200--Sobic010G139200 Sobic003G168200--Sobic008G160300 Sobic003G168200--Sobic003G171900 Sobic003G369533--SobicK029400 Sobic003G218950 Sobic003G218950 Sobic003G369533--Sobic003G218950 Sobic003G369533--Sobic003G168200 Sobic003G369533--Sobic007G149200 Sobic003G369533--Sobic005G116400 Sobic007G065000 Sobic007G065000 Sobic003G369533--Sobic007G065000 Sobic003G369533--Sobic003G352000 Sobic003G369566 Sobic003G369566 Sobic003G369533--Sobic003G369566 Sobic003G369533--Sobic003G169000 SobicK029400--Sobic003G352000 SobicK029400--Sobic003G168200 SobicK029400--Sobic002G278100 SobicK029400--Sobic003G369533 SobicK029400--Sobic010G201266 SobicK029400--Sobic007G149200 SobicK029400--Sobic003G172400 SobicK029400--Sobic005G116400 SobicK029400--Sobic008G160300 Sobic003G352000--SobicK029400 Sobic003G352000--Sobic003G168200 Sobic003G352000--Sobic007G149200 Sobic003G352000--Sobic002G278100 Sobic003G352000--Sobic010G201266 Sobic006G057100 Sobic006G057100 Sobic003G352000--Sobic006G057100 Sobic003G352000--Sobic003G172400 Sobic003G352000--Sobic003G369533 Sobic003G352000--Sobic003G218950 Sobic010G107601--Sobic003G172400 Sobic005G167100 Sobic005G167100 Sobic010G107601--Sobic005G167100 Sobic010G107601--Sobic008G160300 Sobic010G107601--Sobic010G201266 Sobic010G107601--Sobic003G171900 Sobic010G107601--Sobic002G278100 Sobic003G169400 Sobic003G169400 Sobic010G107601--Sobic003G169400 Sobic005G096500 Sobic005G096500 Sobic010G107601--Sobic005G096500 Sobic003G168500 Sobic003G168500 Sobic010G107601--Sobic003G168500 Sobic007G141650--Sobic005G096500 Sobic007G141650--Sobic002G278100 Sobic007G141650--Sobic010G201266 Sobic007G141650--Sobic010G107601 Sobic007G141650--Sobic003G172400 Sobic007G141650--Sobic008G160300 Sobic007G141650--Sobic003G171900 Sobic007G141650--Sobic005G167100 Sobic007G201200 Sobic007G201200 Sobic007G141650--Sobic007G201200
Octagon: transcription factors


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