Gene annotation
Transcriptome id Sobic.003G171900.1
Synonym
Functional annotation -
UniProt A0A1B6Q3T2 , A1E9R3
Pfam PF03742
Panther DB PTHR35773 PTHR35773:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0017004; cytochrome complex assembly GO:0009512cytochrome b6f complex


Orthologs (automatic annotation)
TAIR ATCG00210 : electron transporter, transferring electrons within cytochrome b6/f complex of photosystem IIs
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium PNT75851 , KQK09170
Barley AGP50744
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L
2 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
3 Sobic.003G172400 conserved hypothetical protein -
4 Sobic.002G278100 armadillo/beta-catenin repeat family protein, putative, expressed -
5 Sobic.010G201266 - K05573: NAD(P)H-quinone oxidoreductase subunit 2
K02992: RP-S7, MRPS7, small subunit ribosomal protein S7
6 Sobic.010G107601 - -
7 Sobic.003G168425 - K02963: RP-S18, MRPS18, small subunit ribosomal protein S18
8 Sobic.004G087050 - -
9 Sobic.003G168200 - -
10 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
11 Sobic.005G110493 - -
12 Sobic.004G337600 - -
13 Sobic.010G139200 photosystem II P680 chlorophyll A apoprotein, putative, expressed -
14 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
15 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
16 Sobic.005G167100 - -
17 Sobic.003G172500 - -
18 Sobic.K029400 conserved hypothetical protein -
19 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
20 Sobic.005G096500 - -


Gene co-expression network
sample Sobic003G171900 Sobic003G171900 Sobic008G160300 Sobic008G160300 Sobic003G171900--Sobic008G160300 Sobic003G168500 Sobic003G168500 Sobic003G171900--Sobic003G168500 Sobic003G172400 Sobic003G172400 Sobic003G171900--Sobic003G172400 Sobic002G278100 Sobic002G278100 Sobic003G171900--Sobic002G278100 Sobic010G201266 Sobic010G201266 Sobic003G171900--Sobic010G201266 Sobic010G107601 Sobic010G107601 Sobic003G171900--Sobic010G107601 Sobic003G168425 Sobic003G168425 Sobic003G171900--Sobic003G168425 Sobic004G087050 Sobic004G087050 Sobic003G171900--Sobic004G087050 Sobic003G168200 Sobic003G168200 Sobic003G171900--Sobic003G168200 Sobic008G160300--Sobic003G171900 Sobic008G160300--Sobic003G172400 Sobic008G160300--Sobic003G168500 Sobic008G160300--Sobic002G278100 Sobic008G160300--Sobic010G107601 Sobic008G160300--Sobic010G201266 Sobic008G160300--Sobic003G168425 Sobic008G160300--Sobic003G168200 Sobic005G167100 Sobic005G167100 Sobic008G160300--Sobic005G167100 Sobic002G044500 Sobic002G044500 Sobic003G168500--Sobic002G044500 Sobic003G168500--Sobic003G171900 Sobic003G168500--Sobic008G160300 Sobic003G172850 Sobic003G172850 Sobic003G168500--Sobic003G172850 Sobic003G169400 Sobic003G169400 Sobic003G168500--Sobic003G169400 Sobic004G337600 Sobic004G337600 Sobic003G168500--Sobic004G337600 Sobic003G168500--Sobic003G172400 Sobic003G168500--Sobic010G107601 Sobic003G169300 Sobic003G169300 Sobic003G168500--Sobic003G169300 Sobic003G172400--Sobic005G167100 Sobic003G172400--Sobic010G107601 Sobic003G172400--Sobic008G160300 Sobic003G172400--Sobic002G278100 Sobic003G172400--Sobic003G171900 Sobic003G172400--Sobic010G201266 Sobic005G096500 Sobic005G096500 Sobic003G172400--Sobic005G096500 Sobic003G172400--Sobic003G168500 SobicK029400 SobicK029400 Sobic003G172400--SobicK029400 Sobic002G278100--Sobic010G201266 Sobic002G278100--Sobic008G160300 Sobic002G278100--Sobic003G168200 Sobic002G278100--Sobic003G172400 Sobic002G278100--Sobic003G171900 Sobic007G149200 Sobic007G149200 Sobic002G278100--Sobic007G149200 Sobic002G278100--Sobic010G107601 Sobic007G141650 Sobic007G141650 Sobic002G278100--Sobic007G141650 Sobic005G116400 Sobic005G116400 Sobic002G278100--Sobic005G116400 Sobic010G201266--Sobic002G278100 Sobic010G201266--Sobic005G116400 Sobic010G201266--Sobic010G107601 Sobic010G201266--Sobic008G160300 Sobic010G201266--Sobic003G172400 Sobic010G201266--Sobic003G171900 Sobic010G201266--Sobic003G168200 Sobic010G201266--Sobic007G149200 Sobic010G201266--Sobic007G141650 Sobic010G107601--Sobic003G172400 Sobic010G107601--Sobic005G167100 Sobic010G107601--Sobic008G160300 Sobic010G107601--Sobic010G201266 Sobic010G107601--Sobic003G171900 Sobic010G107601--Sobic002G278100 Sobic010G107601--Sobic003G169400 Sobic010G107601--Sobic005G096500 Sobic010G107601--Sobic003G168500 Sobic003G168425--Sobic004G087050 Sobic005G110493 Sobic005G110493 Sobic003G168425--Sobic005G110493 Sobic010G139200 Sobic010G139200 Sobic003G168425--Sobic010G139200 Sobic003G168425--Sobic003G169300 Sobic003G168425--Sobic003G171900 Sobic003G172500 Sobic003G172500 Sobic003G168425--Sobic003G172500 Sobic003G130200 Sobic003G130200 Sobic003G168425--Sobic003G130200 Sobic004G210400 Sobic004G210400 Sobic003G168425--Sobic004G210400 Sobic003G168425--Sobic008G160300 Sobic004G087050--Sobic010G139200 Sobic004G087050--Sobic003G168425 Sobic004G087050--Sobic005G110493 Sobic004G087050--Sobic003G172500 Sobic004G087050--Sobic003G168200 Sobic009G123100 Sobic009G123100 Sobic004G087050--Sobic009G123100 Sobic004G087050--Sobic003G169300 Sobic004G087050--Sobic003G171900 Sobic004G087050--Sobic004G210400 Sobic003G168200--Sobic007G149200 Sobic003G168200--Sobic002G278100 Sobic003G352000 Sobic003G352000 Sobic003G168200--Sobic003G352000 Sobic003G168200--SobicK029400 Sobic003G168200--Sobic004G087050 Sobic003G168200--Sobic010G201266 Sobic003G168200--Sobic010G139200 Sobic003G168200--Sobic008G160300 Sobic003G168200--Sobic003G171900
Octagon: transcription factors


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