Gene annotation
Transcriptome id Sobic.003G168500.1
Synonym Sb03g017570
Functional annotation chloroplast 50S ribosomal protein L20, putative, expressed
UniProt A0A109NCZ7 , A0A120GUP4 , A0A1B6Q3V1 , A1E9U7
Pfam PF00453
Panther DB PTHR10986
NCBI CDD KOG4707; Mitochondrial/chloroplast ribosomal protein L20
KEGG Orthology K02887; RP-L20, MRPL20, large subunit ribosomal protein L20
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR ATCG00660 : ribosomal protein L20
RAP-DB (Rice) LOC_Os08g15306.1 : chloroplast 50S ribosomal protein L20, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT73982 , KQJ84941 , PNT63588 , KQJ94398 , KQK12743
Barley HORVU6Hr1G025320.1 , HORVU6Hr1G025320.2 , HORVU6Hr1G022980.1 , HORVU5Hr1G065070.1 , AGP50777 , HORVU6Hr1G037210.1 , HORVU0Hr1G026140.1 , HORVU0Hr1G033470.1 , HORVU0Hr1G032960.1 , HORVU2Hr1G054550.1 , HORVU0Hr1G037890.1 , HORVU0Hr1G028410.1 , HORVU7Hr1G065910.1 , HORVU0Hr1G037440.1 , HORVU0Hr1G035180.1 , HORVU0Hr1G037620.1 , HORVU6Hr1G049370.1 , HORVU0Hr1G033740.1 , HORVU0Hr1G031440.1 , HORVU0Hr1G029890.1 , HORVU0Hr1G036930.1
Wheat TraesCS3B02G187200 , TraesCS2D02G271100 , TraesCS5D02G376900 , TraesCS3D02G053200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
2 Sobic.003G171900 - -
3 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L
4 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
5 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
6 Sobic.004G337600 - -
7 Sobic.003G172400 conserved hypothetical protein -
8 Sobic.010G107601 - -
9 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
10 Sobic.002G149966 - -
11 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
12 Sobic.007G201200 thaumatin, putative, expressed -
13 Sobic.002G150032 - -
14 Sobic.005G110493 - -
15 Sobic.005G096500 - -
16 Sobic.003G168425 - K02963: RP-S18, MRPS18, small subunit ribosomal protein S18
17 Sobic.005G167100 - -
18 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
19 Sobic.004G251400 - -
20 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15


Gene co-expression network
sample Sobic003G168500 Sobic003G168500 Sobic002G044500 Sobic002G044500 Sobic003G168500--Sobic002G044500 Sobic003G171900 Sobic003G171900 Sobic003G168500--Sobic003G171900 Sobic008G160300 Sobic008G160300 Sobic003G168500--Sobic008G160300 Sobic003G172850 Sobic003G172850 Sobic003G168500--Sobic003G172850 Sobic003G169400 Sobic003G169400 Sobic003G168500--Sobic003G169400 Sobic004G337600 Sobic004G337600 Sobic003G168500--Sobic004G337600 Sobic003G172400 Sobic003G172400 Sobic003G168500--Sobic003G172400 Sobic010G107601 Sobic010G107601 Sobic003G168500--Sobic010G107601 Sobic003G169300 Sobic003G169300 Sobic003G168500--Sobic003G169300 Sobic002G044500--Sobic003G168500 Sobic002G149966 Sobic002G149966 Sobic002G044500--Sobic002G149966 Sobic002G044500--Sobic003G169400 Sobic002G150032 Sobic002G150032 Sobic002G044500--Sobic002G150032 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic003G172900 Sobic003G172900 Sobic002G044500--Sobic003G172900 Sobic006G124850 Sobic006G124850 Sobic002G044500--Sobic006G124850 Sobic001G266000 Sobic001G266000 Sobic002G044500--Sobic001G266000 Sobic003G171900--Sobic008G160300 Sobic003G171900--Sobic003G168500 Sobic003G171900--Sobic003G172400 Sobic002G278100 Sobic002G278100 Sobic003G171900--Sobic002G278100 Sobic010G201266 Sobic010G201266 Sobic003G171900--Sobic010G201266 Sobic003G171900--Sobic010G107601 Sobic003G168425 Sobic003G168425 Sobic003G171900--Sobic003G168425 Sobic004G087050 Sobic004G087050 Sobic003G171900--Sobic004G087050 Sobic003G168200 Sobic003G168200 Sobic003G171900--Sobic003G168200 Sobic008G160300--Sobic003G171900 Sobic008G160300--Sobic003G172400 Sobic008G160300--Sobic003G168500 Sobic008G160300--Sobic002G278100 Sobic008G160300--Sobic010G107601 Sobic008G160300--Sobic010G201266 Sobic008G160300--Sobic003G168425 Sobic008G160300--Sobic003G168200 Sobic005G167100 Sobic005G167100 Sobic008G160300--Sobic005G167100 Sobic003G172850--Sobic003G168500 Sobic003G172850--Sobic001G266000 Sobic003G173266 Sobic003G173266 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172850--Sobic003G172900 Sobic003G172850--Sobic002G150032 Sobic003G172850--Sobic003G169300 Sobic003G168800 Sobic003G168800 Sobic003G172850--Sobic003G168800 Sobic004G251400 Sobic004G251400 Sobic003G172850--Sobic004G251400 Sobic003G169400--Sobic003G168500 Sobic003G169400--Sobic002G044500 Sobic003G169400--Sobic010G107601 Sobic003G169400--Sobic006G124850 Sobic007G201200 Sobic007G201200 Sobic003G169400--Sobic007G201200 Sobic005G096500 Sobic005G096500 Sobic003G169400--Sobic005G096500 Sobic003G169400--Sobic003G172400 Sobic003G169400--Sobic005G167100 Sobic003G169400--Sobic002G149966 Sobic004G337600--Sobic003G168500 Sobic004G337600--Sobic002G044500 Sobic004G337600--Sobic008G160300 Sobic004G337600--Sobic004G251400 Sobic004G337600--Sobic003G171900 Sobic004G337600--Sobic003G172900 Sobic004G337600--Sobic003G169300 Sobic004G337600--Sobic003G172850 Sobic005G110493 Sobic005G110493 Sobic004G337600--Sobic005G110493 Sobic003G172400--Sobic005G167100 Sobic003G172400--Sobic010G107601 Sobic003G172400--Sobic008G160300 Sobic003G172400--Sobic002G278100 Sobic003G172400--Sobic003G171900 Sobic003G172400--Sobic010G201266 Sobic003G172400--Sobic005G096500 Sobic003G172400--Sobic003G168500 SobicK029400 SobicK029400 Sobic003G172400--SobicK029400 Sobic010G107601--Sobic003G172400 Sobic010G107601--Sobic005G167100 Sobic010G107601--Sobic008G160300 Sobic010G107601--Sobic010G201266 Sobic010G107601--Sobic003G171900 Sobic010G107601--Sobic002G278100 Sobic010G107601--Sobic003G169400 Sobic010G107601--Sobic005G096500 Sobic010G107601--Sobic003G168500 Sobic003G169300--Sobic005G110493 Sobic003G169300--Sobic003G168425 Sobic003G169300--Sobic003G173266 Sobic010G052866 Sobic010G052866 Sobic003G169300--Sobic010G052866 Sobic003G169300--Sobic004G087050 Sobic003G172701 Sobic003G172701 Sobic003G169300--Sobic003G172701 Sobic003G172500 Sobic003G172500 Sobic003G169300--Sobic003G172500 Sobic002G148166 Sobic002G148166 Sobic003G169300--Sobic002G148166 Sobic003G169300--Sobic004G251400
Octagon: transcription factors


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