Gene annotation
Transcriptome id Sobic.002G044500.1
Synonym Sb02g003795
Functional annotation chloroplast 30S ribosomal protein S16, putative, expressed
UniProt A0A1B6Q969 , A0A109NDD9 , A1E9Q6
Pfam PF00886
Panther DB PTHR12919 PTHR12919:SF22
NCBI CDD KOG3419; Mitochondrial/chloroplast ribosomal protein S16
KEGG Orthology K02959; RP-S16, MRPS16, small subunit ribosomal protein S16
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR ATCG00050 : ribosomal protein S16
RAP-DB (Rice) LOC_Os10g21196.1 : chloroplast 30S ribosomal protein S16, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK22929
Barley HORVU5Hr1G004610.1 , AGP50737 , HORVU0Hr1G029590.1 , HORVU2Hr1G121500.1 , HORVU0Hr1G028670.1 , HORVU0Hr1G037320.1 , HORVU2Hr1G069640.1 , HORVU6Hr1G046840.1 , HORVU2Hr1G017330.1
Wheat TraesCS5D02G008200 , TraesCS2A02G241700 , TraesCS7B02G091800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
2 Sobic.002G149966 - -
3 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
4 Sobic.002G150032 - -
5 Sobic.004G337600 - -
6 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
7 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
8 Sobic.006G124850 - K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
9 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
10 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L
11 Sobic.003G171900 - -
12 Sobic.003G290050 - -
13 Sobic.007G201200 thaumatin, putative, expressed -
14 Sobic.004G251400 - -
15 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
16 Sobic.003G172400 conserved hypothetical protein -
17 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
18 Sobic.010G254000 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
19 Sobic.005G096500 - -
20 Sobic.002G014900 OsFBD13 - F-box and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic002G044500 Sobic002G044500 Sobic003G168500 Sobic003G168500 Sobic002G044500--Sobic003G168500 Sobic002G149966 Sobic002G149966 Sobic002G044500--Sobic002G149966 Sobic003G169400 Sobic003G169400 Sobic002G044500--Sobic003G169400 Sobic002G150032 Sobic002G150032 Sobic002G044500--Sobic002G150032 Sobic004G337600 Sobic004G337600 Sobic002G044500--Sobic004G337600 Sobic003G172850 Sobic003G172850 Sobic002G044500--Sobic003G172850 Sobic003G172900 Sobic003G172900 Sobic002G044500--Sobic003G172900 Sobic006G124850 Sobic006G124850 Sobic002G044500--Sobic006G124850 Sobic001G266000 Sobic001G266000 Sobic002G044500--Sobic001G266000 Sobic003G168500--Sobic002G044500 Sobic003G171900 Sobic003G171900 Sobic003G168500--Sobic003G171900 Sobic008G160300 Sobic008G160300 Sobic003G168500--Sobic008G160300 Sobic003G168500--Sobic003G172850 Sobic003G168500--Sobic003G169400 Sobic003G168500--Sobic004G337600 Sobic003G172400 Sobic003G172400 Sobic003G168500--Sobic003G172400 Sobic010G107601 Sobic010G107601 Sobic003G168500--Sobic010G107601 Sobic003G169300 Sobic003G169300 Sobic003G168500--Sobic003G169300 Sobic002G149966--Sobic002G150032 Sobic002G149966--Sobic002G044500 Sobic002G149966--Sobic006G124850 Sobic002G149966--Sobic001G266000 Sobic003G290050 Sobic003G290050 Sobic002G149966--Sobic003G290050 Sobic002G014900 Sobic002G014900 Sobic002G149966--Sobic002G014900 Sobic002G149966--Sobic003G172900 Sobic002G149966--Sobic003G168500 Sobic002G149966--Sobic003G172850 Sobic003G169400--Sobic003G168500 Sobic003G169400--Sobic002G044500 Sobic003G169400--Sobic010G107601 Sobic003G169400--Sobic006G124850 Sobic007G201200 Sobic007G201200 Sobic003G169400--Sobic007G201200 Sobic005G096500 Sobic005G096500 Sobic003G169400--Sobic005G096500 Sobic003G169400--Sobic003G172400 Sobic005G167100 Sobic005G167100 Sobic003G169400--Sobic005G167100 Sobic003G169400--Sobic002G149966 Sobic002G150032--Sobic002G149966 Sobic002G150032--Sobic002G014900 Sobic002G150032--Sobic001G266000 Sobic002G150032--Sobic003G172900 Sobic002G150032--Sobic002G044500 Sobic002G150032--Sobic003G172850 Sobic002G150032--Sobic003G290050 Sobic002G150032--Sobic006G124850 Sobic004G251400 Sobic004G251400 Sobic002G150032--Sobic004G251400 Sobic004G337600--Sobic003G168500 Sobic004G337600--Sobic002G044500 Sobic004G337600--Sobic008G160300 Sobic004G337600--Sobic004G251400 Sobic004G337600--Sobic003G171900 Sobic004G337600--Sobic003G172900 Sobic004G337600--Sobic003G169300 Sobic004G337600--Sobic003G172850 Sobic005G110493 Sobic005G110493 Sobic004G337600--Sobic005G110493 Sobic003G172850--Sobic003G168500 Sobic003G172850--Sobic001G266000 Sobic003G173266 Sobic003G173266 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172850--Sobic003G172900 Sobic003G172850--Sobic002G150032 Sobic003G172850--Sobic003G169300 Sobic003G168800 Sobic003G168800 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400 Sobic003G172900--Sobic004G251400 Sobic003G172900--Sobic002G150032 Sobic003G172900--Sobic001G266000 Sobic003G172900--Sobic003G173266 Sobic004G087000 Sobic004G087000 Sobic003G172900--Sobic004G087000 Sobic003G172900--Sobic003G172850 Sobic003G172900--Sobic002G044500 Sobic002G222000 Sobic002G222000 Sobic003G172900--Sobic002G222000 Sobic003G172900--Sobic002G149966 Sobic006G124850--Sobic002G149966 Sobic006G124850--Sobic003G290050 Sobic006G124850--Sobic003G169400 Sobic006G124850--Sobic002G044500 Sobic006G124850--Sobic002G150032 Sobic003G128575 Sobic003G128575 Sobic006G124850--Sobic003G128575 Sobic006G017266 Sobic006G017266 Sobic006G124850--Sobic006G017266 Sobic005G093600 Sobic005G093600 Sobic006G124850--Sobic005G093600 Sobic010G173600 Sobic010G173600 Sobic006G124850--Sobic010G173600 Sobic001G266000--Sobic002G150032 Sobic001G266000--Sobic003G172900 Sobic001G266000--Sobic002G149966 Sobic001G266000--Sobic003G172850 Sobic001G266000--Sobic003G173266 Sobic001G266000--Sobic002G014900 Sobic001G266000--Sobic002G044500 Sobic001G266000--Sobic002G222000 Sobic006G123800 Sobic006G123800 Sobic001G266000--Sobic006G123800
Octagon: transcription factors


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