Gene annotation
Transcriptome id Sobic.003G172850.1
Synonym -
Functional annotation -
UniProt A0A109NDB9 , A0A109NDD3 , A0A1W0VXS5 , A1E9R4 , A1E9X4
Pfam PF04563 PF04561
Panther DB PTHR20856 PTHR20856:SF20
NCBI CDD -
KEGG Orthology K03043; DNA-directed RNA polymerase subunit beta
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR ATCG00190 : RNA polymerase subunit beta
RAP-DB (Rice) LOC_Os04g16820.1 : DNA-directed RNA polymerase subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a057593 , Zm00025a057880 , Zm00025a057679 , Zm00025a057716 , Zm00025a057702 , Zm00025a023603 , Zm00025a057939
Brachypodium KQJ86053 , KQJ97496
Barley HORVU1Hr1G048140.1 , HORVU5Hr1G005490.1 , HORVU2Hr1G121970.1 , HORVU6Hr1G049130.2 , HORVU6Hr1G049130.1 , HORVU6Hr1G037330.1 , HORVU2Hr1G121960.2 , HORVU6Hr1G087900.1 , HORVU5Hr1G082920.2 , HORVU5Hr1G082920.1 , HORVU4Hr1G043880.1 , AGP50805 , HORVU5Hr1G062980.2 , HORVU5Hr1G062980.1 , AGP50745
Wheat TraesCS4A02G155600 , TraesCS6B02G180800 , TraesCS1A02G127100
Populus PNT08319


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
2 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
3 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
4 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
5 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
6 Sobic.002G150032 - -
7 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
8 Sobic.003G168800 photosystem II reaction center protein H, putative, expressed K02709: photosystem II PsbH protein
9 Sobic.004G251400 - -
10 Sobic.004G337600 - -
11 Sobic.003G171900 - -
12 Sobic.002G149966 - -
13 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
14 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L
15 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
16 Sobic.005G110493 - -
17 Sobic.002G014900 OsFBD13 - F-box and FBD domain containing protein, expressed -
18 Sobic.006G192600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR868-14, putative, expressed -
19 Sobic.010G132200 inhibitor I family protein, putative, expressed -
20 Sobic.002G222000 - -


Gene co-expression network
sample Sobic003G172850 Sobic003G172850 Sobic003G168500 Sobic003G168500 Sobic003G172850--Sobic003G168500 Sobic001G266000 Sobic001G266000 Sobic003G172850--Sobic001G266000 Sobic003G173266 Sobic003G173266 Sobic003G172850--Sobic003G173266 Sobic002G044500 Sobic002G044500 Sobic003G172850--Sobic002G044500 Sobic003G172900 Sobic003G172900 Sobic003G172850--Sobic003G172900 Sobic002G150032 Sobic002G150032 Sobic003G172850--Sobic002G150032 Sobic003G169300 Sobic003G169300 Sobic003G172850--Sobic003G169300 Sobic003G168800 Sobic003G168800 Sobic003G172850--Sobic003G168800 Sobic004G251400 Sobic004G251400 Sobic003G172850--Sobic004G251400 Sobic003G168500--Sobic002G044500 Sobic003G171900 Sobic003G171900 Sobic003G168500--Sobic003G171900 Sobic008G160300 Sobic008G160300 Sobic003G168500--Sobic008G160300 Sobic003G168500--Sobic003G172850 Sobic003G169400 Sobic003G169400 Sobic003G168500--Sobic003G169400 Sobic004G337600 Sobic004G337600 Sobic003G168500--Sobic004G337600 Sobic003G172400 Sobic003G172400 Sobic003G168500--Sobic003G172400 Sobic010G107601 Sobic010G107601 Sobic003G168500--Sobic010G107601 Sobic003G168500--Sobic003G169300 Sobic001G266000--Sobic002G150032 Sobic001G266000--Sobic003G172900 Sobic002G149966 Sobic002G149966 Sobic001G266000--Sobic002G149966 Sobic001G266000--Sobic003G172850 Sobic001G266000--Sobic003G173266 Sobic002G014900 Sobic002G014900 Sobic001G266000--Sobic002G014900 Sobic001G266000--Sobic002G044500 Sobic002G222000 Sobic002G222000 Sobic001G266000--Sobic002G222000 Sobic006G123800 Sobic006G123800 Sobic001G266000--Sobic006G123800 Sobic003G173266--Sobic003G169300 Sobic003G173266--Sobic003G172900 Sobic003G173266--Sobic003G172850 Sobic003G173266--Sobic001G266000 Sobic003G173266--Sobic004G251400 Sobic003G173266--Sobic002G222000 Sobic005G110493 Sobic005G110493 Sobic003G173266--Sobic005G110493 Sobic002G148166 Sobic002G148166 Sobic003G173266--Sobic002G148166 Sobic010G052866 Sobic010G052866 Sobic003G173266--Sobic010G052866 Sobic002G044500--Sobic003G168500 Sobic002G044500--Sobic002G149966 Sobic002G044500--Sobic003G169400 Sobic002G044500--Sobic002G150032 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic002G044500--Sobic003G172900 Sobic006G124850 Sobic006G124850 Sobic002G044500--Sobic006G124850 Sobic002G044500--Sobic001G266000 Sobic003G172900--Sobic004G251400 Sobic003G172900--Sobic002G150032 Sobic003G172900--Sobic001G266000 Sobic003G172900--Sobic003G173266 Sobic004G087000 Sobic004G087000 Sobic003G172900--Sobic004G087000 Sobic003G172900--Sobic003G172850 Sobic003G172900--Sobic002G044500 Sobic003G172900--Sobic002G222000 Sobic003G172900--Sobic002G149966 Sobic002G150032--Sobic002G149966 Sobic002G150032--Sobic002G014900 Sobic002G150032--Sobic001G266000 Sobic002G150032--Sobic003G172900 Sobic002G150032--Sobic002G044500 Sobic002G150032--Sobic003G172850 Sobic003G290050 Sobic003G290050 Sobic002G150032--Sobic003G290050 Sobic002G150032--Sobic006G124850 Sobic002G150032--Sobic004G251400 Sobic003G169300--Sobic005G110493 Sobic003G168425 Sobic003G168425 Sobic003G169300--Sobic003G168425 Sobic003G169300--Sobic003G173266 Sobic003G169300--Sobic010G052866 Sobic004G087050 Sobic004G087050 Sobic003G169300--Sobic004G087050 Sobic003G172701 Sobic003G172701 Sobic003G169300--Sobic003G172701 Sobic003G172500 Sobic003G172500 Sobic003G169300--Sobic003G172500 Sobic003G169300--Sobic002G148166 Sobic003G169300--Sobic004G251400 Sobic003G168800--Sobic003G172850 Sobic003G168800--Sobic010G052866 Sobic003G344300 Sobic003G344300 Sobic003G168800--Sobic003G344300 Sobic006G192600 Sobic006G192600 Sobic003G168800--Sobic006G192600 Sobic001G293900 Sobic001G293900 Sobic003G168800--Sobic001G293900 Sobic010G132200 Sobic010G132200 Sobic003G168800--Sobic010G132200 Sobic003G168800--Sobic004G251400 Sobic003G168800--Sobic003G173266 Sobic003G168800--Sobic003G168500 Sobic004G251400--Sobic003G172900 Sobic004G251400--Sobic004G087000 Sobic007G109200 Sobic007G109200 Sobic004G251400--Sobic007G109200 Sobic004G251400--Sobic003G173266 Sobic004G251400--Sobic003G169300 Sobic004G251400--Sobic003G172850 Sobic004G251400--Sobic004G337600 Sobic004G251400--Sobic003G172701 Sobic004G251400--Sobic005G110493
Octagon: transcription factors


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