Gene annotation
Transcriptome id Sobic.003G168800.1
Synonym Sb03g017590
Functional annotation photosystem II reaction center protein H, putative, expressed
UniProt C5XLA0 , A1E9V3
Pfam PF00737
Panther DB PTHR34469
NCBI CDD -
KEGG Orthology K02709; photosystem II PsbH protein
Gene Ontology GO:0009523; photosystem II GO:0015979photosynthesis GO:0016020membrane


Orthologs (automatic annotation)
TAIR ATCG00710 : photosystem II reaction center protein H
RAP-DB (Rice) LOC_Os08g15296.1 : photosystem II reaction center protein H, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK12738 , KQK22228 , PNT61052 , KQK07649 , PNT75856
Barley HORVU0Hr1G024680.1 , AGP50783 , HORVU0Hr1G026170.1 , HORVU0Hr1G026830.1 , HORVU0Hr1G033730.1 , HORVU0Hr1G037910.1 , HORVU7Hr1G065800.1 , HORVU0Hr1G037400.1 , HORVU0Hr1G036960.1 , HORVU5Hr1G065030.1 , HORVU0Hr1G028390.1 , HORVU0Hr1G030700.1 , HORVU2Hr1G048390.1 , HORVU4Hr1G021930.1 , HORVU0Hr1G033460.1 , HORVU0Hr1G035170.1 , HORVU0Hr1G029930.1 , HORVU6Hr1G049410.1 , HORVU6Hr1G037230.1 , HORVU0Hr1G027540.1 , HORVU0Hr1G032950.1 , HORVU1Hr1G044400.1 , HORVU0Hr1G034460.1
Wheat TraesCS7A02G095600 , TraesCS6B02G126500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
2 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
3 Sobic.003G344300 - -
4 Sobic.006G192600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR868-14, putative, expressed -
5 Sobic.001G293900 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
6 Sobic.010G132200 inhibitor I family protein, putative, expressed -
7 Sobic.004G251400 - -
8 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
9 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
10 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
11 Sobic.003G172500 - -
12 Sobic.004G337600 - -
13 Sobic.003G171900 - -
14 Sobic.010G035600 - -
15 Sobic.002G165200 - -
16 Sobic.010G185250 - -
17 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L
18 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
19 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
20 Sobic.005G110493 - -


Gene co-expression network
sample Sobic003G168800 Sobic003G168800 Sobic003G172850 Sobic003G172850 Sobic003G168800--Sobic003G172850 Sobic010G052866 Sobic010G052866 Sobic003G168800--Sobic010G052866 Sobic003G344300 Sobic003G344300 Sobic003G168800--Sobic003G344300 Sobic006G192600 Sobic006G192600 Sobic003G168800--Sobic006G192600 Sobic001G293900 Sobic001G293900 Sobic003G168800--Sobic001G293900 Sobic010G132200 Sobic010G132200 Sobic003G168800--Sobic010G132200 Sobic004G251400 Sobic004G251400 Sobic003G168800--Sobic004G251400 Sobic003G173266 Sobic003G173266 Sobic003G168800--Sobic003G173266 Sobic003G168500 Sobic003G168500 Sobic003G168800--Sobic003G168500 Sobic003G172850--Sobic003G168500 Sobic001G266000 Sobic001G266000 Sobic003G172850--Sobic001G266000 Sobic003G172850--Sobic003G173266 Sobic002G044500 Sobic002G044500 Sobic003G172850--Sobic002G044500 Sobic003G172900 Sobic003G172900 Sobic003G172850--Sobic003G172900 Sobic002G150032 Sobic002G150032 Sobic003G172850--Sobic002G150032 Sobic003G169300 Sobic003G169300 Sobic003G172850--Sobic003G169300 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400 Sobic003G172500 Sobic003G172500 Sobic010G052866--Sobic003G172500 Sobic010G052866--Sobic003G169300 Sobic005G110493 Sobic005G110493 Sobic010G052866--Sobic005G110493 SobicK032300 SobicK032300 Sobic010G052866--SobicK032300 Sobic010G052866--Sobic003G173266 Sobic004G087050 Sobic004G087050 Sobic010G052866--Sobic004G087050 Sobic003G168425 Sobic003G168425 Sobic010G052866--Sobic003G168425 Sobic010G052866--Sobic003G168800 Sobic001G230050 Sobic001G230050 Sobic010G052866--Sobic001G230050 Sobic003G344300--Sobic003G168800 Sobic002G165200 Sobic002G165200 Sobic003G344300--Sobic002G165200 Sobic004G019550 Sobic004G019550 Sobic003G344300--Sobic004G019550 Sobic010G035600 Sobic010G035600 Sobic003G344300--Sobic010G035600 Sobic003G119750 Sobic003G119750 Sobic003G344300--Sobic003G119750 Sobic001G154000 Sobic001G154000 Sobic003G344300--Sobic001G154000 Sobic010G185250 Sobic010G185250 Sobic003G344300--Sobic010G185250 Sobic003G344300--Sobic001G293900 Sobic003G344300--Sobic006G192600 Sobic004G337600 Sobic004G337600 Sobic006G192600--Sobic004G337600 Sobic006G192600--Sobic003G168500 Sobic006G192600--Sobic003G172850 Sobic006G192600--Sobic003G168800 Sobic006G192600--Sobic002G044500 Sobic006G192600--Sobic004G251400 Sobic003G172400 Sobic003G172400 Sobic006G192600--Sobic003G172400 Sobic006G192600--Sobic002G165200 Sobic008G160300 Sobic008G160300 Sobic006G192600--Sobic008G160300 Sobic001G293900--Sobic003G119750 Sobic001G293900--Sobic010G132200 Sobic003G169400 Sobic003G169400 Sobic001G293900--Sobic003G169400 Sobic001G293900--Sobic003G168800 Sobic001G293900--Sobic003G172850 Sobic003G423400 Sobic003G423400 Sobic001G293900--Sobic003G423400 Sobic006G124850 Sobic006G124850 Sobic001G293900--Sobic006G124850 Sobic001G293900--Sobic006G192600 Sobic001G293900--Sobic003G168500 Sobic010G132200--Sobic001G293900 Sobic010G132200--Sobic003G169400 Sobic010G107601 Sobic010G107601 Sobic010G132200--Sobic010G107601 Sobic010G132200--Sobic003G168500 Sobic010G132200--Sobic003G172850 Sobic010G132200--Sobic003G423400 Sobic010G132200--Sobic003G168800 Sobic003G171900 Sobic003G171900 Sobic010G132200--Sobic003G171900 Sobic010G132200--Sobic003G172400 Sobic004G251400--Sobic003G172900 Sobic004G087000 Sobic004G087000 Sobic004G251400--Sobic004G087000 Sobic007G109200 Sobic007G109200 Sobic004G251400--Sobic007G109200 Sobic004G251400--Sobic003G173266 Sobic004G251400--Sobic003G169300 Sobic004G251400--Sobic003G172850 Sobic004G251400--Sobic004G337600 Sobic003G172701 Sobic003G172701 Sobic004G251400--Sobic003G172701 Sobic004G251400--Sobic005G110493 Sobic003G173266--Sobic003G169300 Sobic003G173266--Sobic003G172900 Sobic003G173266--Sobic003G172850 Sobic003G173266--Sobic001G266000 Sobic003G173266--Sobic004G251400 Sobic002G222000 Sobic002G222000 Sobic003G173266--Sobic002G222000 Sobic003G173266--Sobic005G110493 Sobic002G148166 Sobic002G148166 Sobic003G173266--Sobic002G148166 Sobic003G173266--Sobic010G052866 Sobic003G168500--Sobic002G044500 Sobic003G168500--Sobic003G171900 Sobic003G168500--Sobic008G160300 Sobic003G168500--Sobic003G172850 Sobic003G168500--Sobic003G169400 Sobic003G168500--Sobic004G337600 Sobic003G168500--Sobic003G172400 Sobic003G168500--Sobic010G107601 Sobic003G168500--Sobic003G169300
Octagon: transcription factors


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