Gene annotation
Transcriptome id Sobic.006G192600.1
Synonym Sb06g026540
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide repeat protein PPR868-14, putative, expressed
UniProt A0A1B6PMU0
Pfam PF14432 PF12854 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF550
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G22070 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os04g49520.1 : pentatricopeptide repeat protein PPR868-14, putative, expressed
MaizeGDB (Corn) Zm00025a010058
Brachypodium KQJ84221
Barley HORVU2Hr1G104660.3 , HORVU2Hr1G104660.2 , HORVU2Hr1G104660.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G337600 - -
2 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
3 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
4 Sobic.003G168800 photosystem II reaction center protein H, putative, expressed K02709: photosystem II PsbH protein
5 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
6 Sobic.004G251400 - -
7 Sobic.003G172400 conserved hypothetical protein -
8 Sobic.002G165200 - -
9 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L
10 Sobic.003G171900 - -
11 Sobic.001G293900 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
12 Sobic.010G132200 inhibitor I family protein, putative, expressed -
13 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
14 Sobic.006G057050 - -
15 Sobic.010G107601 - -
16 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
17 Sobic.005G167100 - -
18 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
19 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
20 Sobic.003G423400 OsFBX191 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic006G192600 Sobic006G192600 Sobic004G337600 Sobic004G337600 Sobic006G192600--Sobic004G337600 Sobic003G168500 Sobic003G168500 Sobic006G192600--Sobic003G168500 Sobic003G172850 Sobic003G172850 Sobic006G192600--Sobic003G172850 Sobic003G168800 Sobic003G168800 Sobic006G192600--Sobic003G168800 Sobic002G044500 Sobic002G044500 Sobic006G192600--Sobic002G044500 Sobic004G251400 Sobic004G251400 Sobic006G192600--Sobic004G251400 Sobic003G172400 Sobic003G172400 Sobic006G192600--Sobic003G172400 Sobic002G165200 Sobic002G165200 Sobic006G192600--Sobic002G165200 Sobic008G160300 Sobic008G160300 Sobic006G192600--Sobic008G160300 Sobic004G337600--Sobic003G168500 Sobic004G337600--Sobic002G044500 Sobic004G337600--Sobic008G160300 Sobic004G337600--Sobic004G251400 Sobic003G171900 Sobic003G171900 Sobic004G337600--Sobic003G171900 Sobic003G172900 Sobic003G172900 Sobic004G337600--Sobic003G172900 Sobic003G169300 Sobic003G169300 Sobic004G337600--Sobic003G169300 Sobic004G337600--Sobic003G172850 Sobic005G110493 Sobic005G110493 Sobic004G337600--Sobic005G110493 Sobic003G168500--Sobic002G044500 Sobic003G168500--Sobic003G171900 Sobic003G168500--Sobic008G160300 Sobic003G168500--Sobic003G172850 Sobic003G169400 Sobic003G169400 Sobic003G168500--Sobic003G169400 Sobic003G168500--Sobic004G337600 Sobic003G168500--Sobic003G172400 Sobic010G107601 Sobic010G107601 Sobic003G168500--Sobic010G107601 Sobic003G168500--Sobic003G169300 Sobic003G172850--Sobic003G168500 Sobic001G266000 Sobic001G266000 Sobic003G172850--Sobic001G266000 Sobic003G173266 Sobic003G173266 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172850--Sobic003G172900 Sobic002G150032 Sobic002G150032 Sobic003G172850--Sobic002G150032 Sobic003G172850--Sobic003G169300 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400 Sobic003G168800--Sobic003G172850 Sobic010G052866 Sobic010G052866 Sobic003G168800--Sobic010G052866 Sobic003G344300 Sobic003G344300 Sobic003G168800--Sobic003G344300 Sobic003G168800--Sobic006G192600 Sobic001G293900 Sobic001G293900 Sobic003G168800--Sobic001G293900 Sobic010G132200 Sobic010G132200 Sobic003G168800--Sobic010G132200 Sobic003G168800--Sobic004G251400 Sobic003G168800--Sobic003G173266 Sobic003G168800--Sobic003G168500 Sobic002G044500--Sobic003G168500 Sobic002G149966 Sobic002G149966 Sobic002G044500--Sobic002G149966 Sobic002G044500--Sobic003G169400 Sobic002G044500--Sobic002G150032 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic002G044500--Sobic003G172900 Sobic006G124850 Sobic006G124850 Sobic002G044500--Sobic006G124850 Sobic002G044500--Sobic001G266000 Sobic004G251400--Sobic003G172900 Sobic004G087000 Sobic004G087000 Sobic004G251400--Sobic004G087000 Sobic007G109200 Sobic007G109200 Sobic004G251400--Sobic007G109200 Sobic004G251400--Sobic003G173266 Sobic004G251400--Sobic003G169300 Sobic004G251400--Sobic003G172850 Sobic004G251400--Sobic004G337600 Sobic003G172701 Sobic003G172701 Sobic004G251400--Sobic003G172701 Sobic004G251400--Sobic005G110493 Sobic005G167100 Sobic005G167100 Sobic003G172400--Sobic005G167100 Sobic003G172400--Sobic010G107601 Sobic003G172400--Sobic008G160300 Sobic002G278100 Sobic002G278100 Sobic003G172400--Sobic002G278100 Sobic003G172400--Sobic003G171900 Sobic010G201266 Sobic010G201266 Sobic003G172400--Sobic010G201266 Sobic005G096500 Sobic005G096500 Sobic003G172400--Sobic005G096500 Sobic003G172400--Sobic003G168500 SobicK029400 SobicK029400 Sobic003G172400--SobicK029400 Sobic010G185250 Sobic010G185250 Sobic002G165200--Sobic010G185250 Sobic001G182900 Sobic001G182900 Sobic002G165200--Sobic001G182900 Sobic003G218950 Sobic003G218950 Sobic002G165200--Sobic003G218950 Sobic002G165200--SobicK029400 Sobic003G369533 Sobic003G369533 Sobic002G165200--Sobic003G369533 Sobic010G035600 Sobic010G035600 Sobic002G165200--Sobic010G035600 Sobic002G165200--Sobic006G192600 Sobic003G412500 Sobic003G412500 Sobic002G165200--Sobic003G412500 Sobic003G172500 Sobic003G172500 Sobic002G165200--Sobic003G172500 Sobic008G160300--Sobic003G171900 Sobic008G160300--Sobic003G172400 Sobic008G160300--Sobic003G168500 Sobic008G160300--Sobic002G278100 Sobic008G160300--Sobic010G107601 Sobic008G160300--Sobic010G201266 Sobic003G168425 Sobic003G168425 Sobic008G160300--Sobic003G168425 Sobic003G168200 Sobic003G168200 Sobic008G160300--Sobic003G168200 Sobic008G160300--Sobic005G167100
Octagon: transcription factors


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