Gene annotation
Transcriptome id Sobic.001G293900.1
Synonym Sb01g028710
Functional annotation CAF1 family ribonuclease containing protein, putative, expressed
UniProt A0A1B6QLX3
Pfam PF04857
Panther DB PTHR10797 PTHR10797:SF7
NCBI CDD KOG0304; mRNA deadenylase subunit
KEGG Orthology K12581; CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT3G44260 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os06g34520.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G119750 - -
2 Sobic.010G132200 inhibitor I family protein, putative, expressed -
3 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
4 Sobic.003G168800 photosystem II reaction center protein H, putative, expressed K02709: photosystem II PsbH protein
5 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
6 Sobic.003G423400 OsFBX191 - F-box domain containing protein, expressed -
7 Sobic.006G124850 - K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
8 Sobic.006G192600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat protein PPR868-14, putative, expressed -
9 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
10 Sobic.010G107601 - -
11 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
12 Sobic.005G167100 - -
13 Sobic.007G004750 - -
14 Sobic.003G255850 - -
15 Sobic.003G172400 conserved hypothetical protein -
16 Sobic.008G157700 BURP domain containing protein, expressed -
17 Sobic.002G150032 - -
18 Sobic.003G344300 - -
19 Sobic.002G149966 - -
20 Sobic.003G290050 - -


Gene co-expression network
sample Sobic001G293900 Sobic001G293900 Sobic003G119750 Sobic003G119750 Sobic001G293900--Sobic003G119750 Sobic010G132200 Sobic010G132200 Sobic001G293900--Sobic010G132200 Sobic003G169400 Sobic003G169400 Sobic001G293900--Sobic003G169400 Sobic003G168800 Sobic003G168800 Sobic001G293900--Sobic003G168800 Sobic003G172850 Sobic003G172850 Sobic001G293900--Sobic003G172850 Sobic003G423400 Sobic003G423400 Sobic001G293900--Sobic003G423400 Sobic006G124850 Sobic006G124850 Sobic001G293900--Sobic006G124850 Sobic006G192600 Sobic006G192600 Sobic001G293900--Sobic006G192600 Sobic003G168500 Sobic003G168500 Sobic001G293900--Sobic003G168500 Sobic003G119750--Sobic001G293900 Sobic003G344300 Sobic003G344300 Sobic003G119750--Sobic003G344300 Sobic007G004750 Sobic007G004750 Sobic003G119750--Sobic007G004750 Sobic003G119750--Sobic010G132200 Sobic003G119750--Sobic003G168800 Sobic003G119750--Sobic003G423400 Sobic003G119750--Sobic006G192600 Sobic001G128000 Sobic001G128000 Sobic003G119750--Sobic001G128000 Sobic003G119750--Sobic003G169400 Sobic010G132200--Sobic001G293900 Sobic010G132200--Sobic003G169400 Sobic010G107601 Sobic010G107601 Sobic010G132200--Sobic010G107601 Sobic010G132200--Sobic003G168500 Sobic010G132200--Sobic003G172850 Sobic010G132200--Sobic003G423400 Sobic010G132200--Sobic003G168800 Sobic003G171900 Sobic003G171900 Sobic010G132200--Sobic003G171900 Sobic003G172400 Sobic003G172400 Sobic010G132200--Sobic003G172400 Sobic003G169400--Sobic003G168500 Sobic002G044500 Sobic002G044500 Sobic003G169400--Sobic002G044500 Sobic003G169400--Sobic010G107601 Sobic003G169400--Sobic006G124850 Sobic007G201200 Sobic007G201200 Sobic003G169400--Sobic007G201200 Sobic005G096500 Sobic005G096500 Sobic003G169400--Sobic005G096500 Sobic003G169400--Sobic003G172400 Sobic005G167100 Sobic005G167100 Sobic003G169400--Sobic005G167100 Sobic002G149966 Sobic002G149966 Sobic003G169400--Sobic002G149966 Sobic003G168800--Sobic003G172850 Sobic010G052866 Sobic010G052866 Sobic003G168800--Sobic010G052866 Sobic003G168800--Sobic003G344300 Sobic003G168800--Sobic006G192600 Sobic003G168800--Sobic001G293900 Sobic003G168800--Sobic010G132200 Sobic004G251400 Sobic004G251400 Sobic003G168800--Sobic004G251400 Sobic003G173266 Sobic003G173266 Sobic003G168800--Sobic003G173266 Sobic003G168800--Sobic003G168500 Sobic003G172850--Sobic003G168500 Sobic001G266000 Sobic001G266000 Sobic003G172850--Sobic001G266000 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172900 Sobic003G172900 Sobic003G172850--Sobic003G172900 Sobic002G150032 Sobic002G150032 Sobic003G172850--Sobic002G150032 Sobic003G169300 Sobic003G169300 Sobic003G172850--Sobic003G169300 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400 Sobic003G423400--Sobic010G132200 Sobic003G423400--Sobic001G293900 Sobic003G423400--Sobic003G169400 Sobic003G423400--Sobic006G192600 Sobic003G423400--Sobic010G107601 Sobic003G423400--Sobic003G168500 Sobic003G423400--Sobic003G172850 Sobic003G423400--Sobic005G167100 Sobic003G423400--Sobic003G168800 Sobic006G124850--Sobic002G149966 Sobic003G290050 Sobic003G290050 Sobic006G124850--Sobic003G290050 Sobic006G124850--Sobic003G169400 Sobic006G124850--Sobic002G044500 Sobic006G124850--Sobic002G150032 Sobic003G128575 Sobic003G128575 Sobic006G124850--Sobic003G128575 Sobic006G017266 Sobic006G017266 Sobic006G124850--Sobic006G017266 Sobic005G093600 Sobic005G093600 Sobic006G124850--Sobic005G093600 Sobic010G173600 Sobic010G173600 Sobic006G124850--Sobic010G173600 Sobic004G337600 Sobic004G337600 Sobic006G192600--Sobic004G337600 Sobic006G192600--Sobic003G168500 Sobic006G192600--Sobic003G172850 Sobic006G192600--Sobic003G168800 Sobic006G192600--Sobic002G044500 Sobic006G192600--Sobic004G251400 Sobic006G192600--Sobic003G172400 Sobic002G165200 Sobic002G165200 Sobic006G192600--Sobic002G165200 Sobic008G160300 Sobic008G160300 Sobic006G192600--Sobic008G160300 Sobic003G168500--Sobic002G044500 Sobic003G168500--Sobic003G171900 Sobic003G168500--Sobic008G160300 Sobic003G168500--Sobic003G172850 Sobic003G168500--Sobic003G169400 Sobic003G168500--Sobic004G337600 Sobic003G168500--Sobic003G172400 Sobic003G168500--Sobic010G107601 Sobic003G168500--Sobic003G169300
Octagon: transcription factors


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