Gene annotation
Transcriptome id Sobic.006G124850.1
Synonym -
Functional annotation -
UniProt A0A109NDD8 , A0A1Z5RDK6 , A1E9V7
Pfam PF00411
Panther DB PTHR11759
NCBI CDD -
KEGG Orthology K02948; RP-S11, MRPS11, small subunit ribosomal protein S11
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR ATCG00750 : ribosomal protein S11
RAP-DB (Rice) LOC_Os10g21332.1 : chloroplast 30S ribosomal protein S11, putative, expressed
MaizeGDB (Corn) Zm00025a053961
Brachypodium KQK18195 , PNT76847 , PNT67431
Barley HORVU0Hr1G033720.1 , HORVU0Hr1G033720.2 , HORVU0Hr1G029960.4 , HORVU0Hr1G029960.5 , HORVU0Hr1G029960.2 , HORVU0Hr1G029960.3 , HORVU5Hr1G065000.2 , HORVU0Hr1G027520.1 , HORVU0Hr1G026280.1 , HORVU5Hr1G065000.3 , HORVU3Hr1G048780.2 , HORVU3Hr1G048780.1 , HORVU0Hr1G026820.1 , HORVU0Hr1G026820.2 , HORVU0Hr1G026190.1 , HORVU0Hr1G032940.1 , HORVU5Hr1G065000.4 , AGP50787 , HORVU0Hr1G037940.1 , HORVU6Hr1G049440.5 , HORVU6Hr1G049440.4 , HORVU6Hr1G049440.3 , HORVU6Hr1G049440.2 , HORVU0Hr1G030690.1 , HORVU0Hr1G034340.2 , HORVU0Hr1G034340.1 , HORVU7Hr1G065790.4 , HORVU7Hr1G065790.5 , HORVU5Hr1G065000.1 , HORVU7Hr1G065790.3 , HORVU0Hr1G036970.1 , HORVU6Hr1G037240.1 , HORVU0Hr1G033450.1 , HORVU0Hr1G037380.1 , HORVU2Hr1G062250.4 , HORVU2Hr1G062250.3 , HORVU0Hr1G028380.1
Wheat TraesCS6A02G194000 , TraesCS4D02G043500 , TraesCS4D02G043500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G149966 - -
2 Sobic.003G290050 - -
3 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
4 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
5 Sobic.002G150032 - -
6 Sobic.003G128575 - -
7 Sobic.006G017266 - -
8 Sobic.005G093600 protein kinase domain containing protein, putative, expressed -
9 Sobic.010G173600 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
10 Sobic.005G183450 - -
11 Sobic.006G020350 - -
12 Sobic.002G014900 OsFBD13 - F-box and FBD domain containing protein, expressed -
13 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
14 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
15 Sobic.006G147350 - -
16 Sobic.008G157700 BURP domain containing protein, expressed -
17 Sobic.001G293900 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
18 Sobic.007G201200 thaumatin, putative, expressed -
19 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
20 Sobic.003G255850 - -


Gene co-expression network
sample Sobic006G124850 Sobic006G124850 Sobic002G149966 Sobic002G149966 Sobic006G124850--Sobic002G149966 Sobic003G290050 Sobic003G290050 Sobic006G124850--Sobic003G290050 Sobic003G169400 Sobic003G169400 Sobic006G124850--Sobic003G169400 Sobic002G044500 Sobic002G044500 Sobic006G124850--Sobic002G044500 Sobic002G150032 Sobic002G150032 Sobic006G124850--Sobic002G150032 Sobic003G128575 Sobic003G128575 Sobic006G124850--Sobic003G128575 Sobic006G017266 Sobic006G017266 Sobic006G124850--Sobic006G017266 Sobic005G093600 Sobic005G093600 Sobic006G124850--Sobic005G093600 Sobic010G173600 Sobic010G173600 Sobic006G124850--Sobic010G173600 Sobic002G149966--Sobic002G150032 Sobic002G149966--Sobic002G044500 Sobic002G149966--Sobic006G124850 Sobic001G266000 Sobic001G266000 Sobic002G149966--Sobic001G266000 Sobic002G149966--Sobic003G290050 Sobic002G014900 Sobic002G014900 Sobic002G149966--Sobic002G014900 Sobic003G172900 Sobic003G172900 Sobic002G149966--Sobic003G172900 Sobic003G168500 Sobic003G168500 Sobic002G149966--Sobic003G168500 Sobic003G172850 Sobic003G172850 Sobic002G149966--Sobic003G172850 Sobic003G290050--Sobic006G124850 Sobic003G290050--Sobic002G149966 Sobic003G290050--Sobic002G150032 Sobic003G290050--Sobic002G044500 Sobic003G290050--Sobic001G266000 Sobic003G290050--Sobic003G169400 Sobic003G290050--Sobic002G014900 Sobic003G290050--Sobic003G168500 Sobic003G290050--Sobic003G172850 Sobic003G169400--Sobic003G168500 Sobic003G169400--Sobic002G044500 Sobic010G107601 Sobic010G107601 Sobic003G169400--Sobic010G107601 Sobic003G169400--Sobic006G124850 Sobic007G201200 Sobic007G201200 Sobic003G169400--Sobic007G201200 Sobic005G096500 Sobic005G096500 Sobic003G169400--Sobic005G096500 Sobic003G172400 Sobic003G172400 Sobic003G169400--Sobic003G172400 Sobic005G167100 Sobic005G167100 Sobic003G169400--Sobic005G167100 Sobic003G169400--Sobic002G149966 Sobic002G044500--Sobic003G168500 Sobic002G044500--Sobic002G149966 Sobic002G044500--Sobic003G169400 Sobic002G044500--Sobic002G150032 Sobic004G337600 Sobic004G337600 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic002G044500--Sobic003G172900 Sobic002G044500--Sobic006G124850 Sobic002G044500--Sobic001G266000 Sobic002G150032--Sobic002G149966 Sobic002G150032--Sobic002G014900 Sobic002G150032--Sobic001G266000 Sobic002G150032--Sobic003G172900 Sobic002G150032--Sobic002G044500 Sobic002G150032--Sobic003G172850 Sobic002G150032--Sobic003G290050 Sobic002G150032--Sobic006G124850 Sobic004G251400 Sobic004G251400 Sobic002G150032--Sobic004G251400 Sobic003G128575--Sobic006G017266 Sobic005G183450 Sobic005G183450 Sobic003G128575--Sobic005G183450 Sobic006G020350 Sobic006G020350 Sobic003G128575--Sobic006G020350 Sobic003G128575--Sobic005G093600 Sobic003G128575--Sobic010G173600 Sobic003G128575--Sobic006G124850 Sobic006G147350 Sobic006G147350 Sobic003G128575--Sobic006G147350 Sobic003G255850 Sobic003G255850 Sobic003G128575--Sobic003G255850 Sobic007G149750 Sobic007G149750 Sobic003G128575--Sobic007G149750 Sobic006G017266--Sobic003G128575 Sobic006G017266--Sobic005G183450 Sobic006G017266--Sobic006G020350 Sobic006G017266--Sobic005G093600 Sobic006G017266--Sobic010G173600 Sobic006G017266--Sobic006G124850 Sobic006G017266--Sobic006G147350 Sobic006G017266--Sobic003G255850 Sobic001G365332 Sobic001G365332 Sobic006G017266--Sobic001G365332 Sobic005G093600--Sobic003G128575 Sobic005G093600--Sobic010G173600 Sobic005G093600--Sobic006G017266 Sobic005G093600--Sobic006G020350 Sobic005G093600--Sobic005G183450 Sobic005G093600--Sobic006G147350 Sobic005G093600--Sobic006G124850 Sobic005G093600--Sobic003G255850 Sobic005G093600--Sobic007G149750 Sobic010G173600--Sobic005G093600 Sobic010G173600--Sobic003G128575 Sobic010G173600--Sobic006G147350 Sobic010G173600--Sobic006G017266 Sobic010G173600--Sobic006G020350 Sobic010G173600--Sobic003G255850 Sobic010G173600--Sobic007G149750 Sobic010G173600--Sobic005G183450 Sobic002G322101 Sobic002G322101 Sobic010G173600--Sobic002G322101
Octagon: transcription factors


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