Gene annotation
Transcriptome id Sobic.001G266000.1
Synonym
Functional annotation OsClp10 - Putative Clp protease homologue, expressed
UniProt A0A1B6QL72
Pfam -
Panther DB PTHR10381 PTHR10381:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR ATCG00670 : plastid-encoded CLP P
RAP-DB (Rice) LOC_Os06g39712.1 : OsClp10 - Putative Clp protease homologue, expressed
MaizeGDB (Corn) Zm00025a057580 , Zm00025a057667 , Zm00025a057609 , Zm00025a057692
Brachypodium KQK18186 , KQJ84940 , PNT75108 , KQK12742
Barley HORVU6Hr1G037220.1 , HORVU0Hr1G037900.1 , HORVU3Hr1G044750.1 , HORVU3Hr1G044750.3 , HORVU3Hr1G044750.2 , AGP50779 , HORVU0Hr1G036940.1 , HORVU6Hr1G023010.1 , HORVU6Hr1G049380.1 , HORVU0Hr1G026150.1 , HORVU0Hr1G029900.1 , HORVU5Hr1G065060.1 , HORVU7Hr1G065830.1 , HORVU0Hr1G027550.1
Wheat TraesCSU02G266900 , TraesCS3A02G215600 , TraesCS1D02G182500 , TraesCS1A02G111400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G150032 - -
2 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
3 Sobic.002G149966 - -
4 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
5 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
6 Sobic.002G014900 OsFBD13 - F-box and FBD domain containing protein, expressed -
7 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
8 Sobic.002G222000 - -
9 Sobic.006G123800 - -
10 Sobic.004G251400 - -
11 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
12 Sobic.003G290050 - -
13 Sobic.010G254000 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
14 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
15 Sobic.004G087000 ATP synthase subunit beta, putative, expressed K02112: ATPF1B, F-type H+/Na+-transporting ATPase subunit beta
16 Sobic.006G124850 - K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
17 Sobic.004G337600 - -
18 Sobic.002G148166 - -
19 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
20 Sobic.005G110493 - -


Gene co-expression network
sample Sobic001G266000 Sobic001G266000 Sobic002G150032 Sobic002G150032 Sobic001G266000--Sobic002G150032 Sobic003G172900 Sobic003G172900 Sobic001G266000--Sobic003G172900 Sobic002G149966 Sobic002G149966 Sobic001G266000--Sobic002G149966 Sobic003G172850 Sobic003G172850 Sobic001G266000--Sobic003G172850 Sobic003G173266 Sobic003G173266 Sobic001G266000--Sobic003G173266 Sobic002G014900 Sobic002G014900 Sobic001G266000--Sobic002G014900 Sobic002G044500 Sobic002G044500 Sobic001G266000--Sobic002G044500 Sobic002G222000 Sobic002G222000 Sobic001G266000--Sobic002G222000 Sobic006G123800 Sobic006G123800 Sobic001G266000--Sobic006G123800 Sobic002G150032--Sobic002G149966 Sobic002G150032--Sobic002G014900 Sobic002G150032--Sobic001G266000 Sobic002G150032--Sobic003G172900 Sobic002G150032--Sobic002G044500 Sobic002G150032--Sobic003G172850 Sobic003G290050 Sobic003G290050 Sobic002G150032--Sobic003G290050 Sobic006G124850 Sobic006G124850 Sobic002G150032--Sobic006G124850 Sobic004G251400 Sobic004G251400 Sobic002G150032--Sobic004G251400 Sobic003G172900--Sobic004G251400 Sobic003G172900--Sobic002G150032 Sobic003G172900--Sobic001G266000 Sobic003G172900--Sobic003G173266 Sobic004G087000 Sobic004G087000 Sobic003G172900--Sobic004G087000 Sobic003G172900--Sobic003G172850 Sobic003G172900--Sobic002G044500 Sobic003G172900--Sobic002G222000 Sobic003G172900--Sobic002G149966 Sobic002G149966--Sobic002G150032 Sobic002G149966--Sobic002G044500 Sobic002G149966--Sobic006G124850 Sobic002G149966--Sobic001G266000 Sobic002G149966--Sobic003G290050 Sobic002G149966--Sobic002G014900 Sobic002G149966--Sobic003G172900 Sobic003G168500 Sobic003G168500 Sobic002G149966--Sobic003G168500 Sobic002G149966--Sobic003G172850 Sobic003G172850--Sobic003G168500 Sobic003G172850--Sobic001G266000 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172850--Sobic003G172900 Sobic003G172850--Sobic002G150032 Sobic003G169300 Sobic003G169300 Sobic003G172850--Sobic003G169300 Sobic003G168800 Sobic003G168800 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400 Sobic003G173266--Sobic003G169300 Sobic003G173266--Sobic003G172900 Sobic003G173266--Sobic003G172850 Sobic003G173266--Sobic001G266000 Sobic003G173266--Sobic004G251400 Sobic003G173266--Sobic002G222000 Sobic005G110493 Sobic005G110493 Sobic003G173266--Sobic005G110493 Sobic002G148166 Sobic002G148166 Sobic003G173266--Sobic002G148166 Sobic010G052866 Sobic010G052866 Sobic003G173266--Sobic010G052866 Sobic002G014900--Sobic002G150032 Sobic002G014900--Sobic001G266000 Sobic002G014900--Sobic002G149966 Sobic002G014900--Sobic003G172900 Sobic002G014900--Sobic003G172850 Sobic002G014900--Sobic002G044500 Sobic002G014900--Sobic006G124850 Sobic002G014900--Sobic004G251400 Sobic002G014900--Sobic003G290050 Sobic002G044500--Sobic003G168500 Sobic002G044500--Sobic002G149966 Sobic003G169400 Sobic003G169400 Sobic002G044500--Sobic003G169400 Sobic002G044500--Sobic002G150032 Sobic004G337600 Sobic004G337600 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic002G044500--Sobic003G172900 Sobic002G044500--Sobic006G124850 Sobic002G044500--Sobic001G266000 Sobic002G222000--Sobic003G172900 Sobic002G222000--Sobic002G148166 Sobic010G254000 Sobic010G254000 Sobic002G222000--Sobic010G254000 Sobic002G222000--Sobic003G173266 Sobic002G222000--Sobic001G266000 Sobic005G002050 Sobic005G002050 Sobic002G222000--Sobic005G002050 Sobic002G222000--Sobic003G169300 Sobic002G222000--Sobic005G110493 Sobic003G130200 Sobic003G130200 Sobic002G222000--Sobic003G130200 Sobic006G123800--Sobic001G266000 Sobic006G123800--Sobic003G173266 Sobic002G288700 Sobic002G288700 Sobic006G123800--Sobic002G288700 Sobic006G123800--Sobic003G172850 Sobic006G123800--Sobic003G172900 Sobic006G123800--Sobic002G014900 Sobic006G123800--Sobic002G150032 Sobic006G123800--Sobic004G251400 Sobic007G223250 Sobic007G223250 Sobic006G123800--Sobic007G223250
Octagon: transcription factors


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