Gene annotation
Transcriptome id Sobic.004G087000.1
Synonym
Functional annotation ATP synthase subunit beta, putative, expressed
UniProt A0A1Z5RMJ5
Pfam PF02823 PF00306 PF00006
Panther DB PTHR15184 PTHR15184:SF43
NCBI CDD -
KEGG Orthology K02112; ATPF1B, F-type H+/Na+-transporting ATPase subunit beta
Gene Ontology GO:0015986; ATP synthesis coupled proton transport GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR ATCG00480 : ATP synthase subunit beta
RAP-DB (Rice) LOC_Os03g55874.1 : ATP synthase subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a057753 , Zm00025a057671 , Zm00025a057754 , Zm00025a057612 , Zm00025a057613 , Zm00025a057921 , Zm00025a057582 , Zm00025a057583 , Zm00025a057687 , Zm00025a057686 , Zm00025a057685 , Zm00025a057157 , Zm00025a057156 , Zm00025a057709 , Zm00025a057721 , Zm00025a057670
Brachypodium KQK05579 , PNT70990 , KQJ96832 , KQK18173 , PNT67425 , PNT67424 , PNT60817 , PNT60816 , PNT75855 , KQK04348 , KQK04349
Barley HORVU4Hr1G060400.1 , HORVU3Hr1G053790.1 , HORVU3Hr1G053790.2 , HORVU0Hr1G031360.2 , HORVU5Hr1G064690.8 , HORVU5Hr1G064690.1 , HORVU5Hr1G064690.2 , HORVU5Hr1G064690.3 , HORVU5Hr1G064690.4 , HORVU5Hr1G064690.5 , HORVU5Hr1G064690.6 , HORVU5Hr1G064690.7 , HORVU0Hr1G031470.1 , HORVU0Hr1G030780.2 , HORVU0Hr1G030780.1 , HORVU6Hr1G049250.6 , HORVU6Hr1G049250.7 , HORVU6Hr1G049250.4 , HORVU0Hr1G028470.1 , HORVU0Hr1G033800.1 , HORVU0Hr1G026070.2 , HORVU0Hr1G026070.1 , HORVU0Hr1G029770.1 , HORVU0Hr1G036350.1 , HORVU0Hr1G027510.1 , HORVU0Hr1G033060.1 , AGP50761 , AGP50762 , HORVU0Hr1G036860.1 , HORVU6Hr1G022990.2 , HORVU6Hr1G022990.1 , HORVU6Hr1G049250.2 , HORVU6Hr1G049250.1 , HORVU6Hr1G049250.5 , HORVU6Hr1G049250.3 , HORVU0Hr1G033050.1
Wheat TraesCS1D02G136000 , TraesCS2D02G584400 , TraesCS2D02G584400 , TraesCS4B02G173900 , TraesCS1D02G181600 , TraesCS4A02G151900
Populus PNS24163


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G109200 ATP synthase epsilon chain, putative, expressed K02114: ATPF1E, F-type H+-transporting ATPase subunit epsilon
2 Sobic.004G251400 - -
3 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
4 Sobic.003G172701 - -
5 Sobic.002G148166 - -
6 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
7 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
8 Sobic.005G110493 - -
9 Sobic.002G222000 - -
10 Sobic.010G254000 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
11 Sobic.004G337600 - -
12 Sobic.006G057050 - -
13 Sobic.002G150032 - -
14 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
15 Sobic.002G014900 OsFBD13 - F-box and FBD domain containing protein, expressed -
16 Sobic.009G148950 - -
17 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
18 Sobic.003G130200 embryonic protein DC-8, putative, expressed -
19 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
20 Sobic.007G223250 - -


Gene co-expression network
sample Sobic004G087000 Sobic004G087000 Sobic007G109200 Sobic007G109200 Sobic004G087000--Sobic007G109200 Sobic004G251400 Sobic004G251400 Sobic004G087000--Sobic004G251400 Sobic003G172900 Sobic003G172900 Sobic004G087000--Sobic003G172900 Sobic003G172701 Sobic003G172701 Sobic004G087000--Sobic003G172701 Sobic002G148166 Sobic002G148166 Sobic004G087000--Sobic002G148166 Sobic003G173266 Sobic003G173266 Sobic004G087000--Sobic003G173266 Sobic003G169300 Sobic003G169300 Sobic004G087000--Sobic003G169300 Sobic005G110493 Sobic005G110493 Sobic004G087000--Sobic005G110493 Sobic002G222000 Sobic002G222000 Sobic004G087000--Sobic002G222000 Sobic007G109200--Sobic004G087000 Sobic007G109200--Sobic003G172701 Sobic007G109200--Sobic004G251400 Sobic007G109200--Sobic003G172900 Sobic007G109200--Sobic002G148166 Sobic006G057050 Sobic006G057050 Sobic007G109200--Sobic006G057050 Sobic007G109200--Sobic003G169300 Sobic007G109200--Sobic003G173266 Sobic007G109200--Sobic005G110493 Sobic004G251400--Sobic003G172900 Sobic004G251400--Sobic004G087000 Sobic004G251400--Sobic007G109200 Sobic004G251400--Sobic003G173266 Sobic004G251400--Sobic003G169300 Sobic003G172850 Sobic003G172850 Sobic004G251400--Sobic003G172850 Sobic004G337600 Sobic004G337600 Sobic004G251400--Sobic004G337600 Sobic004G251400--Sobic003G172701 Sobic004G251400--Sobic005G110493 Sobic003G172900--Sobic004G251400 Sobic002G150032 Sobic002G150032 Sobic003G172900--Sobic002G150032 Sobic001G266000 Sobic001G266000 Sobic003G172900--Sobic001G266000 Sobic003G172900--Sobic003G173266 Sobic003G172900--Sobic004G087000 Sobic003G172900--Sobic003G172850 Sobic002G044500 Sobic002G044500 Sobic003G172900--Sobic002G044500 Sobic003G172900--Sobic002G222000 Sobic002G149966 Sobic002G149966 Sobic003G172900--Sobic002G149966 Sobic003G172701--Sobic007G109200 Sobic009G148950 Sobic009G148950 Sobic003G172701--Sobic009G148950 Sobic003G172701--Sobic005G110493 Sobic003G172701--Sobic002G148166 Sobic003G172701--Sobic006G057050 Sobic003G172701--Sobic004G087000 Sobic003G172701--Sobic003G169300 Sobic002G270733 Sobic002G270733 Sobic003G172701--Sobic002G270733 Sobic004G210400 Sobic004G210400 Sobic003G172701--Sobic004G210400 Sobic002G150200 Sobic002G150200 Sobic002G148166--Sobic002G150200 Sobic003G130200 Sobic003G130200 Sobic002G148166--Sobic003G130200 Sobic002G148166--Sobic003G172701 Sobic002G148166--Sobic005G110493 Sobic002G148166--Sobic004G210400 Sobic005G002050 Sobic005G002050 Sobic002G148166--Sobic005G002050 Sobic002G148166--Sobic003G169300 Sobic002G148166--Sobic004G087000 Sobic002G148166--Sobic002G222000 Sobic003G173266--Sobic003G169300 Sobic003G173266--Sobic003G172900 Sobic003G173266--Sobic003G172850 Sobic003G173266--Sobic001G266000 Sobic003G173266--Sobic004G251400 Sobic003G173266--Sobic002G222000 Sobic003G173266--Sobic005G110493 Sobic003G173266--Sobic002G148166 Sobic010G052866 Sobic010G052866 Sobic003G173266--Sobic010G052866 Sobic003G169300--Sobic005G110493 Sobic003G168425 Sobic003G168425 Sobic003G169300--Sobic003G168425 Sobic003G169300--Sobic003G173266 Sobic003G169300--Sobic010G052866 Sobic004G087050 Sobic004G087050 Sobic003G169300--Sobic004G087050 Sobic003G169300--Sobic003G172701 Sobic003G172500 Sobic003G172500 Sobic003G169300--Sobic003G172500 Sobic003G169300--Sobic002G148166 Sobic003G169300--Sobic004G251400 Sobic005G110493--Sobic003G169300 Sobic005G110493--Sobic003G168425 Sobic005G110493--Sobic004G087050 Sobic005G110493--Sobic003G172701 Sobic010G139200 Sobic010G139200 Sobic005G110493--Sobic010G139200 Sobic005G110493--Sobic003G172500 Sobic005G110493--Sobic003G130200 Sobic005G110493--Sobic002G148166 Sobic005G110493--Sobic010G052866 Sobic002G222000--Sobic003G172900 Sobic002G222000--Sobic002G148166 Sobic010G254000 Sobic010G254000 Sobic002G222000--Sobic010G254000 Sobic002G222000--Sobic003G173266 Sobic002G222000--Sobic001G266000 Sobic002G222000--Sobic005G002050 Sobic002G222000--Sobic003G169300 Sobic002G222000--Sobic005G110493 Sobic002G222000--Sobic003G130200
Octagon: transcription factors


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