Gene annotation
Transcriptome id Sobic.002G014900.2,Sobic.002G014900.1
Synonym Sb02g001500
Functional annotation OsFBD13 - F-box and FBD domain containing protein, expressed
UniProt A0A1W0W1T0 , A0A1W0W1S2
Pfam PF08387
Panther DB PTHR32212:SF61 PTHR32212 PTHR32212 PTHR32212:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02920 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os07g02760.2,LOC_Os07g02760.1 : OsFBD13 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G150032 - -
2 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
3 Sobic.002G149966 - -
4 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
5 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
6 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
7 Sobic.006G124850 - K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
8 Sobic.004G251400 - -
9 Sobic.003G290050 - -
10 Sobic.007G223250 - -
11 Sobic.004G087000 ATP synthase subunit beta, putative, expressed K02112: ATPF1B, F-type H+/Na+-transporting ATPase subunit beta
12 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
13 Sobic.006G123800 - -
14 Sobic.002G222000 - -
15 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
16 Sobic.007G109200 ATP synthase epsilon chain, putative, expressed K02114: ATPF1E, F-type H+-transporting ATPase subunit epsilon
17 Sobic.004G337600 - -
18 Sobic.008G157700 BURP domain containing protein, expressed -
19 Sobic.002G288700 - K02711: photosystem II PsbJ protein
20 Sobic.010G254000 cycloartenol synthase, putative, expressed K19011: achilleol B synthase


Gene co-expression network
sample Sobic002G014900 Sobic002G014900 Sobic002G150032 Sobic002G150032 Sobic002G014900--Sobic002G150032 Sobic001G266000 Sobic001G266000 Sobic002G014900--Sobic001G266000 Sobic002G149966 Sobic002G149966 Sobic002G014900--Sobic002G149966 Sobic003G172900 Sobic003G172900 Sobic002G014900--Sobic003G172900 Sobic003G172850 Sobic003G172850 Sobic002G014900--Sobic003G172850 Sobic002G044500 Sobic002G044500 Sobic002G014900--Sobic002G044500 Sobic006G124850 Sobic006G124850 Sobic002G014900--Sobic006G124850 Sobic004G251400 Sobic004G251400 Sobic002G014900--Sobic004G251400 Sobic003G290050 Sobic003G290050 Sobic002G014900--Sobic003G290050 Sobic002G150032--Sobic002G149966 Sobic002G150032--Sobic002G014900 Sobic002G150032--Sobic001G266000 Sobic002G150032--Sobic003G172900 Sobic002G150032--Sobic002G044500 Sobic002G150032--Sobic003G172850 Sobic002G150032--Sobic003G290050 Sobic002G150032--Sobic006G124850 Sobic002G150032--Sobic004G251400 Sobic001G266000--Sobic002G150032 Sobic001G266000--Sobic003G172900 Sobic001G266000--Sobic002G149966 Sobic001G266000--Sobic003G172850 Sobic003G173266 Sobic003G173266 Sobic001G266000--Sobic003G173266 Sobic001G266000--Sobic002G014900 Sobic001G266000--Sobic002G044500 Sobic002G222000 Sobic002G222000 Sobic001G266000--Sobic002G222000 Sobic006G123800 Sobic006G123800 Sobic001G266000--Sobic006G123800 Sobic002G149966--Sobic002G150032 Sobic002G149966--Sobic002G044500 Sobic002G149966--Sobic006G124850 Sobic002G149966--Sobic001G266000 Sobic002G149966--Sobic003G290050 Sobic002G149966--Sobic002G014900 Sobic002G149966--Sobic003G172900 Sobic003G168500 Sobic003G168500 Sobic002G149966--Sobic003G168500 Sobic002G149966--Sobic003G172850 Sobic003G172900--Sobic004G251400 Sobic003G172900--Sobic002G150032 Sobic003G172900--Sobic001G266000 Sobic003G172900--Sobic003G173266 Sobic004G087000 Sobic004G087000 Sobic003G172900--Sobic004G087000 Sobic003G172900--Sobic003G172850 Sobic003G172900--Sobic002G044500 Sobic003G172900--Sobic002G222000 Sobic003G172900--Sobic002G149966 Sobic003G172850--Sobic003G168500 Sobic003G172850--Sobic001G266000 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172850--Sobic003G172900 Sobic003G172850--Sobic002G150032 Sobic003G169300 Sobic003G169300 Sobic003G172850--Sobic003G169300 Sobic003G168800 Sobic003G168800 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400 Sobic002G044500--Sobic003G168500 Sobic002G044500--Sobic002G149966 Sobic003G169400 Sobic003G169400 Sobic002G044500--Sobic003G169400 Sobic002G044500--Sobic002G150032 Sobic004G337600 Sobic004G337600 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic002G044500--Sobic003G172900 Sobic002G044500--Sobic006G124850 Sobic002G044500--Sobic001G266000 Sobic006G124850--Sobic002G149966 Sobic006G124850--Sobic003G290050 Sobic006G124850--Sobic003G169400 Sobic006G124850--Sobic002G044500 Sobic006G124850--Sobic002G150032 Sobic003G128575 Sobic003G128575 Sobic006G124850--Sobic003G128575 Sobic006G017266 Sobic006G017266 Sobic006G124850--Sobic006G017266 Sobic005G093600 Sobic005G093600 Sobic006G124850--Sobic005G093600 Sobic010G173600 Sobic010G173600 Sobic006G124850--Sobic010G173600 Sobic004G251400--Sobic003G172900 Sobic004G251400--Sobic004G087000 Sobic007G109200 Sobic007G109200 Sobic004G251400--Sobic007G109200 Sobic004G251400--Sobic003G173266 Sobic004G251400--Sobic003G169300 Sobic004G251400--Sobic003G172850 Sobic004G251400--Sobic004G337600 Sobic003G172701 Sobic003G172701 Sobic004G251400--Sobic003G172701 Sobic005G110493 Sobic005G110493 Sobic004G251400--Sobic005G110493 Sobic003G290050--Sobic006G124850 Sobic003G290050--Sobic002G149966 Sobic003G290050--Sobic002G150032 Sobic003G290050--Sobic002G044500 Sobic003G290050--Sobic001G266000 Sobic003G290050--Sobic003G169400 Sobic003G290050--Sobic002G014900 Sobic003G290050--Sobic003G168500 Sobic003G290050--Sobic003G172850
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.