Gene annotation
Transcriptome id Sobic.003G173266.1
Synonym -
Functional annotation -
UniProt A0A1W0VXR5 , A0A120GUP2 , A1E9X0
Pfam PF00312
Panther DB PTHR23321 PTHR23321:SF30
NCBI CDD -
KEGG Orthology K02956; RP-S15, MRPS15, small subunit ribosomal protein S15
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR ATCG01120 : chloroplast ribosomal protein S15
RAP-DB (Rice) LOC_Os04g16728.1 : chloroplast 30S ribosomal protein S15, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK18212 , KQJ96819
Barley HORVU0Hr1G037550.1 , HORVU0Hr1G025180.1 , HORVU7Hr1G076930.1 , HORVU0Hr1G036470.1 , HORVU1Hr1G065350.1 , HORVU0Hr1G025110.1 , HORVU0Hr1G035300.1 , AGP50800 , HORVU0Hr1G031250.1 , HORVU5Hr1G064780.1 , HORVU0Hr1G028640.1 , HORVU4Hr1G047310.1 , HORVU3Hr1G107770.1 , HORVU6Hr1G024300.1 , HORVU2Hr1G051430.1 , HORVU0Hr1G033970.1 , HORVU0Hr1G033600.1 , HORVU0Hr1G034860.1 , HORVU6Hr1G087840.1 , HORVU1Hr1G092420.1 , HORVU1Hr1G048180.1 , HORVU0Hr1G026990.1 , HORVU6Hr1G037400.1 , HORVU0Hr1G033130.1 , HORVU5Hr1G119210.1 , HORVU3Hr1G044610.1 , HORVU5Hr1G005360.1 , HORVU1Hr1G018890.1 , HORVU0Hr1G038030.1
Wheat TraesCS7A02G290800 , TraesCS1A02G346000 , TraesCS1B02G359600 , TraesCS5B02G258600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
2 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
3 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
4 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
5 Sobic.004G251400 - -
6 Sobic.002G222000 - -
7 Sobic.005G110493 - -
8 Sobic.002G148166 - -
9 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
10 Sobic.004G087000 ATP synthase subunit beta, putative, expressed K02112: ATPF1B, F-type H+/Na+-transporting ATPase subunit beta
11 Sobic.007G109200 ATP synthase epsilon chain, putative, expressed K02114: ATPF1E, F-type H+-transporting ATPase subunit epsilon
12 Sobic.010G254000 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
13 Sobic.006G123800 - -
14 Sobic.002G150032 - -
15 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
16 Sobic.003G172701 - -
17 Sobic.003G168425 - K02963: RP-S18, MRPS18, small subunit ribosomal protein S18
18 Sobic.004G337600 - -
19 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
20 Sobic.003G166400 - K02911: RP-L32, MRPL32, large subunit ribosomal protein L32


Gene co-expression network
sample Sobic003G173266 Sobic003G173266 Sobic003G169300 Sobic003G169300 Sobic003G173266--Sobic003G169300 Sobic003G172900 Sobic003G172900 Sobic003G173266--Sobic003G172900 Sobic003G172850 Sobic003G172850 Sobic003G173266--Sobic003G172850 Sobic001G266000 Sobic001G266000 Sobic003G173266--Sobic001G266000 Sobic004G251400 Sobic004G251400 Sobic003G173266--Sobic004G251400 Sobic002G222000 Sobic002G222000 Sobic003G173266--Sobic002G222000 Sobic005G110493 Sobic005G110493 Sobic003G173266--Sobic005G110493 Sobic002G148166 Sobic002G148166 Sobic003G173266--Sobic002G148166 Sobic010G052866 Sobic010G052866 Sobic003G173266--Sobic010G052866 Sobic003G169300--Sobic005G110493 Sobic003G168425 Sobic003G168425 Sobic003G169300--Sobic003G168425 Sobic003G169300--Sobic003G173266 Sobic003G169300--Sobic010G052866 Sobic004G087050 Sobic004G087050 Sobic003G169300--Sobic004G087050 Sobic003G172701 Sobic003G172701 Sobic003G169300--Sobic003G172701 Sobic003G172500 Sobic003G172500 Sobic003G169300--Sobic003G172500 Sobic003G169300--Sobic002G148166 Sobic003G169300--Sobic004G251400 Sobic003G172900--Sobic004G251400 Sobic002G150032 Sobic002G150032 Sobic003G172900--Sobic002G150032 Sobic003G172900--Sobic001G266000 Sobic003G172900--Sobic003G173266 Sobic004G087000 Sobic004G087000 Sobic003G172900--Sobic004G087000 Sobic003G172900--Sobic003G172850 Sobic002G044500 Sobic002G044500 Sobic003G172900--Sobic002G044500 Sobic003G172900--Sobic002G222000 Sobic002G149966 Sobic002G149966 Sobic003G172900--Sobic002G149966 Sobic003G168500 Sobic003G168500 Sobic003G172850--Sobic003G168500 Sobic003G172850--Sobic001G266000 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172850--Sobic003G172900 Sobic003G172850--Sobic002G150032 Sobic003G172850--Sobic003G169300 Sobic003G168800 Sobic003G168800 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400 Sobic001G266000--Sobic002G150032 Sobic001G266000--Sobic003G172900 Sobic001G266000--Sobic002G149966 Sobic001G266000--Sobic003G172850 Sobic001G266000--Sobic003G173266 Sobic002G014900 Sobic002G014900 Sobic001G266000--Sobic002G014900 Sobic001G266000--Sobic002G044500 Sobic001G266000--Sobic002G222000 Sobic006G123800 Sobic006G123800 Sobic001G266000--Sobic006G123800 Sobic004G251400--Sobic003G172900 Sobic004G251400--Sobic004G087000 Sobic007G109200 Sobic007G109200 Sobic004G251400--Sobic007G109200 Sobic004G251400--Sobic003G173266 Sobic004G251400--Sobic003G169300 Sobic004G251400--Sobic003G172850 Sobic004G337600 Sobic004G337600 Sobic004G251400--Sobic004G337600 Sobic004G251400--Sobic003G172701 Sobic004G251400--Sobic005G110493 Sobic002G222000--Sobic003G172900 Sobic002G222000--Sobic002G148166 Sobic010G254000 Sobic010G254000 Sobic002G222000--Sobic010G254000 Sobic002G222000--Sobic003G173266 Sobic002G222000--Sobic001G266000 Sobic005G002050 Sobic005G002050 Sobic002G222000--Sobic005G002050 Sobic002G222000--Sobic003G169300 Sobic002G222000--Sobic005G110493 Sobic003G130200 Sobic003G130200 Sobic002G222000--Sobic003G130200 Sobic005G110493--Sobic003G169300 Sobic005G110493--Sobic003G168425 Sobic005G110493--Sobic004G087050 Sobic005G110493--Sobic003G172701 Sobic010G139200 Sobic010G139200 Sobic005G110493--Sobic010G139200 Sobic005G110493--Sobic003G172500 Sobic005G110493--Sobic003G130200 Sobic005G110493--Sobic002G148166 Sobic005G110493--Sobic010G052866 Sobic002G150200 Sobic002G150200 Sobic002G148166--Sobic002G150200 Sobic002G148166--Sobic003G130200 Sobic002G148166--Sobic003G172701 Sobic002G148166--Sobic005G110493 Sobic004G210400 Sobic004G210400 Sobic002G148166--Sobic004G210400 Sobic002G148166--Sobic005G002050 Sobic002G148166--Sobic003G169300 Sobic002G148166--Sobic004G087000 Sobic002G148166--Sobic002G222000 Sobic010G052866--Sobic003G172500 Sobic010G052866--Sobic003G169300 Sobic010G052866--Sobic005G110493 SobicK032300 SobicK032300 Sobic010G052866--SobicK032300 Sobic010G052866--Sobic003G173266 Sobic010G052866--Sobic004G087050 Sobic010G052866--Sobic003G168425 Sobic010G052866--Sobic003G168800 Sobic001G230050 Sobic001G230050 Sobic010G052866--Sobic001G230050
Octagon: transcription factors


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