Gene annotation
Transcriptome id Sobic.002G149966.1
Synonym -
Functional annotation -
UniProt A0A1W0W422
Pfam PF00562
Panther DB PTHR20856:SF20 PTHR20856
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR ATCG00190 : RNA polymerase subunit beta
RAP-DB (Rice) LOC_Os04g16820.1 : DNA-directed RNA polymerase subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a057939
Brachypodium -
Barley HORVU2Hr1G121970.2 , HORVU6Hr1G049130.3 , HORVU6Hr1G049130.2 , HORVU0Hr1G028570.1 , HORVU0Hr1G034190.1 , HORVU0Hr1G036760.2 , HORVU0Hr1G036760.1 , HORVU2Hr1G043280.1 , HORVU2Hr1G121960.1 , HORVU2Hr1G121960.2 , AGP50745
Wheat -
Populus PNT08319


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G150032 - -
2 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
3 Sobic.006G124850 - K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
4 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
5 Sobic.003G290050 - -
6 Sobic.002G014900 OsFBD13 - F-box and FBD domain containing protein, expressed -
7 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
8 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
9 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
10 Sobic.003G169400 DNA-directed RNA polymerase subunit beta, putative, expressed K03046: DNA-directed RNA polymerase subunit beta'
11 Sobic.004G337600 - -
12 Sobic.002G222000 - -
13 Sobic.004G251400 - -
14 Sobic.010G254000 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
15 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
16 Sobic.007G201200 thaumatin, putative, expressed -
17 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
18 Sobic.004G087000 ATP synthase subunit beta, putative, expressed K02112: ATPF1B, F-type H+/Na+-transporting ATPase subunit beta
19 Sobic.003G171900 - -
20 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L


Gene co-expression network
sample Sobic002G149966 Sobic002G149966 Sobic002G150032 Sobic002G150032 Sobic002G149966--Sobic002G150032 Sobic002G044500 Sobic002G044500 Sobic002G149966--Sobic002G044500 Sobic006G124850 Sobic006G124850 Sobic002G149966--Sobic006G124850 Sobic001G266000 Sobic001G266000 Sobic002G149966--Sobic001G266000 Sobic003G290050 Sobic003G290050 Sobic002G149966--Sobic003G290050 Sobic002G014900 Sobic002G014900 Sobic002G149966--Sobic002G014900 Sobic003G172900 Sobic003G172900 Sobic002G149966--Sobic003G172900 Sobic003G168500 Sobic003G168500 Sobic002G149966--Sobic003G168500 Sobic003G172850 Sobic003G172850 Sobic002G149966--Sobic003G172850 Sobic002G150032--Sobic002G149966 Sobic002G150032--Sobic002G014900 Sobic002G150032--Sobic001G266000 Sobic002G150032--Sobic003G172900 Sobic002G150032--Sobic002G044500 Sobic002G150032--Sobic003G172850 Sobic002G150032--Sobic003G290050 Sobic002G150032--Sobic006G124850 Sobic004G251400 Sobic004G251400 Sobic002G150032--Sobic004G251400 Sobic002G044500--Sobic003G168500 Sobic002G044500--Sobic002G149966 Sobic003G169400 Sobic003G169400 Sobic002G044500--Sobic003G169400 Sobic002G044500--Sobic002G150032 Sobic004G337600 Sobic004G337600 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic002G044500--Sobic003G172900 Sobic002G044500--Sobic006G124850 Sobic002G044500--Sobic001G266000 Sobic006G124850--Sobic002G149966 Sobic006G124850--Sobic003G290050 Sobic006G124850--Sobic003G169400 Sobic006G124850--Sobic002G044500 Sobic006G124850--Sobic002G150032 Sobic003G128575 Sobic003G128575 Sobic006G124850--Sobic003G128575 Sobic006G017266 Sobic006G017266 Sobic006G124850--Sobic006G017266 Sobic005G093600 Sobic005G093600 Sobic006G124850--Sobic005G093600 Sobic010G173600 Sobic010G173600 Sobic006G124850--Sobic010G173600 Sobic001G266000--Sobic002G150032 Sobic001G266000--Sobic003G172900 Sobic001G266000--Sobic002G149966 Sobic001G266000--Sobic003G172850 Sobic003G173266 Sobic003G173266 Sobic001G266000--Sobic003G173266 Sobic001G266000--Sobic002G014900 Sobic001G266000--Sobic002G044500 Sobic002G222000 Sobic002G222000 Sobic001G266000--Sobic002G222000 Sobic006G123800 Sobic006G123800 Sobic001G266000--Sobic006G123800 Sobic003G290050--Sobic006G124850 Sobic003G290050--Sobic002G149966 Sobic003G290050--Sobic002G150032 Sobic003G290050--Sobic002G044500 Sobic003G290050--Sobic001G266000 Sobic003G290050--Sobic003G169400 Sobic003G290050--Sobic002G014900 Sobic003G290050--Sobic003G168500 Sobic003G290050--Sobic003G172850 Sobic002G014900--Sobic002G150032 Sobic002G014900--Sobic001G266000 Sobic002G014900--Sobic002G149966 Sobic002G014900--Sobic003G172900 Sobic002G014900--Sobic003G172850 Sobic002G014900--Sobic002G044500 Sobic002G014900--Sobic006G124850 Sobic002G014900--Sobic004G251400 Sobic002G014900--Sobic003G290050 Sobic003G172900--Sobic004G251400 Sobic003G172900--Sobic002G150032 Sobic003G172900--Sobic001G266000 Sobic003G172900--Sobic003G173266 Sobic004G087000 Sobic004G087000 Sobic003G172900--Sobic004G087000 Sobic003G172900--Sobic003G172850 Sobic003G172900--Sobic002G044500 Sobic003G172900--Sobic002G222000 Sobic003G172900--Sobic002G149966 Sobic003G168500--Sobic002G044500 Sobic003G171900 Sobic003G171900 Sobic003G168500--Sobic003G171900 Sobic008G160300 Sobic008G160300 Sobic003G168500--Sobic008G160300 Sobic003G168500--Sobic003G172850 Sobic003G168500--Sobic003G169400 Sobic003G168500--Sobic004G337600 Sobic003G172400 Sobic003G172400 Sobic003G168500--Sobic003G172400 Sobic010G107601 Sobic010G107601 Sobic003G168500--Sobic010G107601 Sobic003G169300 Sobic003G169300 Sobic003G168500--Sobic003G169300 Sobic003G172850--Sobic003G168500 Sobic003G172850--Sobic001G266000 Sobic003G172850--Sobic003G173266 Sobic003G172850--Sobic002G044500 Sobic003G172850--Sobic003G172900 Sobic003G172850--Sobic002G150032 Sobic003G172850--Sobic003G169300 Sobic003G168800 Sobic003G168800 Sobic003G172850--Sobic003G168800 Sobic003G172850--Sobic004G251400
Octagon: transcription factors


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