Gene annotation
Transcriptome id Sobic.003G169400.1
Synonym Sb03g017630
Functional annotation DNA-directed RNA polymerase subunit beta, putative, expressed
UniProt A0A125QUH2 , C5XLA4 , H0I4E4 , Q01923
Pfam PF05000 PF04998
Panther DB PTHR19376 PTHR19376:SF38
NCBI CDD -
KEGG Orthology K03046; DNA-directed RNA polymerase subunit beta'
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR ATCG00170 : DNA-directed RNA polymerase family protein
RAP-DB (Rice) LOC_Os04g16830.1 : DNA-directed RNA polymerase subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a057592 , Zm00025a018303 , Zm00025a057940 , Zm00025a057715 , Zm00025a057717 , Zm00025a057881 , Zm00025a037271 , Zm00025a057747 , Zm00025a057621 , Zm00025a057703 , Zm00025a057622 , Zm00025a058063 , Zm00025a057937 , Zm00025a057936 , Zm00025a058064 , Zm00025a057678 , Zm00025a012508
Brachypodium KQK12759 , KQJ96978 , KQK12737 , KQK18165 , KQJ88408 , PNT61988
Barley HORVU4Hr1G071640.1 , HORVU6Hr1G051820.1 , HORVU0Hr1G036780.1 , HORVU6Hr1G042610.1 , HORVU2Hr1G121950.1 , HORVU0Hr1G034370.1 , HORVU2Hr1G121970.6 , HORVU2Hr1G121970.7 , HORVU0Hr1G033890.1 , HORVU2Hr1G121970.5 , HORVU4Hr1G045370.4 , HORVU2Hr1G121970.8 , HORVU0Hr1G028550.1 , HORVU6Hr1G049130.7 , HORVU6Hr1G049130.6 , HORVU6Hr1G049130.5 , HORVU1Hr1G046880.1 , HORVU2Hr1G112660.1 , HORVU2Hr1G112660.2 , HORVU2Hr1G112660.3 , HORVU0Hr1G032710.1 , HORVU0Hr1G032720.1 , HORVU4Hr1G045370.3 , HORVU4Hr1G045370.2 , HORVU4Hr1G045370.1 , HORVU6Hr1G049130.8 , AGP50747 , HORVU4Hr1G045380.6 , HORVU4Hr1G045380.7 , HORVU4Hr1G045380.4 , HORVU4Hr1G045380.2 , HORVU4Hr1G045380.3 , HORVU4Hr1G045380.1
Wheat -
Populus PNT44028 , PNT08321 , PNT21175


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G168500 chloroplast 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
2 Sobic.002G044500 chloroplast 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
3 Sobic.010G107601 - -
4 Sobic.006G124850 - K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
5 Sobic.007G201200 thaumatin, putative, expressed -
6 Sobic.005G096500 - -
7 Sobic.003G172400 conserved hypothetical protein -
8 Sobic.005G167100 - -
9 Sobic.002G149966 - -
10 Sobic.008G160300 NADPH-dependent oxidoreductase, putative K05576: NAD(P)H-quinone oxidoreductase subunit 4L
11 Sobic.001G293900 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
12 Sobic.010G132200 inhibitor I family protein, putative, expressed -
13 Sobic.003G171900 - -
14 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
15 Sobic.003G290050 - -
16 Sobic.004G337600 - -
17 Sobic.002G150032 - -
18 Sobic.002G322101 - -
19 Sobic.007G141650 - -
20 Sobic.010G173600 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase


Gene co-expression network
sample Sobic003G169400 Sobic003G169400 Sobic003G168500 Sobic003G168500 Sobic003G169400--Sobic003G168500 Sobic002G044500 Sobic002G044500 Sobic003G169400--Sobic002G044500 Sobic010G107601 Sobic010G107601 Sobic003G169400--Sobic010G107601 Sobic006G124850 Sobic006G124850 Sobic003G169400--Sobic006G124850 Sobic007G201200 Sobic007G201200 Sobic003G169400--Sobic007G201200 Sobic005G096500 Sobic005G096500 Sobic003G169400--Sobic005G096500 Sobic003G172400 Sobic003G172400 Sobic003G169400--Sobic003G172400 Sobic005G167100 Sobic005G167100 Sobic003G169400--Sobic005G167100 Sobic002G149966 Sobic002G149966 Sobic003G169400--Sobic002G149966 Sobic003G168500--Sobic002G044500 Sobic003G171900 Sobic003G171900 Sobic003G168500--Sobic003G171900 Sobic008G160300 Sobic008G160300 Sobic003G168500--Sobic008G160300 Sobic003G172850 Sobic003G172850 Sobic003G168500--Sobic003G172850 Sobic003G168500--Sobic003G169400 Sobic004G337600 Sobic004G337600 Sobic003G168500--Sobic004G337600 Sobic003G168500--Sobic003G172400 Sobic003G168500--Sobic010G107601 Sobic003G169300 Sobic003G169300 Sobic003G168500--Sobic003G169300 Sobic002G044500--Sobic003G168500 Sobic002G044500--Sobic002G149966 Sobic002G044500--Sobic003G169400 Sobic002G150032 Sobic002G150032 Sobic002G044500--Sobic002G150032 Sobic002G044500--Sobic004G337600 Sobic002G044500--Sobic003G172850 Sobic003G172900 Sobic003G172900 Sobic002G044500--Sobic003G172900 Sobic002G044500--Sobic006G124850 Sobic001G266000 Sobic001G266000 Sobic002G044500--Sobic001G266000 Sobic010G107601--Sobic003G172400 Sobic010G107601--Sobic005G167100 Sobic010G107601--Sobic008G160300 Sobic010G201266 Sobic010G201266 Sobic010G107601--Sobic010G201266 Sobic010G107601--Sobic003G171900 Sobic002G278100 Sobic002G278100 Sobic010G107601--Sobic002G278100 Sobic010G107601--Sobic003G169400 Sobic010G107601--Sobic005G096500 Sobic010G107601--Sobic003G168500 Sobic006G124850--Sobic002G149966 Sobic003G290050 Sobic003G290050 Sobic006G124850--Sobic003G290050 Sobic006G124850--Sobic003G169400 Sobic006G124850--Sobic002G044500 Sobic006G124850--Sobic002G150032 Sobic003G128575 Sobic003G128575 Sobic006G124850--Sobic003G128575 Sobic006G017266 Sobic006G017266 Sobic006G124850--Sobic006G017266 Sobic005G093600 Sobic005G093600 Sobic006G124850--Sobic005G093600 Sobic010G173600 Sobic010G173600 Sobic006G124850--Sobic010G173600 Sobic007G201200--Sobic003G169400 Sobic007G201200--Sobic003G168500 Sobic007G201200--Sobic005G096500 Sobic007G201200--Sobic010G107601 Sobic007G201200--Sobic002G044500 Sobic007G201200--Sobic008G160300 Sobic007G201200--Sobic003G171900 Sobic007G141650 Sobic007G141650 Sobic007G201200--Sobic007G141650 Sobic007G201200--Sobic003G172400 Sobic005G096500--Sobic007G141650 Sobic005G096500--Sobic003G172400 Sobic005G096500--Sobic010G107601 Sobic005G096500--Sobic005G167100 Sobic005G096500--Sobic003G169400 Sobic005G096500--Sobic002G278100 Sobic005G096500--Sobic010G201266 Sobic005G096500--Sobic008G160300 Sobic005G096500--Sobic007G201200 Sobic003G172400--Sobic005G167100 Sobic003G172400--Sobic010G107601 Sobic003G172400--Sobic008G160300 Sobic003G172400--Sobic002G278100 Sobic003G172400--Sobic003G171900 Sobic003G172400--Sobic010G201266 Sobic003G172400--Sobic005G096500 Sobic003G172400--Sobic003G168500 SobicK029400 SobicK029400 Sobic003G172400--SobicK029400 Sobic005G167100--Sobic003G172400 Sobic005G167100--Sobic010G107601 Sobic005G167100--Sobic005G096500 Sobic005G167100--Sobic008G160300 Sobic005G167100--Sobic010G201266 Sobic005G167100--Sobic002G278100 Sobic005G167100--Sobic003G169400 Sobic005G167100--Sobic003G171900 Sobic005G167100--SobicK029400 Sobic002G149966--Sobic002G150032 Sobic002G149966--Sobic002G044500 Sobic002G149966--Sobic006G124850 Sobic002G149966--Sobic001G266000 Sobic002G149966--Sobic003G290050 Sobic002G014900 Sobic002G014900 Sobic002G149966--Sobic002G014900 Sobic002G149966--Sobic003G172900 Sobic002G149966--Sobic003G168500 Sobic002G149966--Sobic003G172850
Octagon: transcription factors


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