Gene annotation
Transcriptome id Sobic.006G124700.1
Synonym Sb06g020510
Functional annotation chloroplast 30S ribosomal protein S8, putative, expressed
UniProt A0A109NDD7 , A0A1B6PLQ0 , A0A109ND29 , A1E9W0
Pfam PF00410
Panther DB PTHR11758
NCBI CDD KOG1754; 40S ribosomal protein S15/S22
KEGG Orthology K02994; RP-S8, small subunit ribosomal protein S8
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR ATCG00770 : ribosomal protein S8
RAP-DB (Rice) LOC_Os08g15278.1 : chloroplast 30S ribosomal protein S8, putative, expressed
MaizeGDB (Corn) Zm00025a057944 , Zm00025a057663 , Zm00025a057758 , Zm00025a057577 , Zm00025a057839 , Zm00025a057924 , Zm00025a057695 , Zm00025a057605 , Zm00025a057875
Brachypodium KQK18198 , KQJ96826
Barley HORVU0Hr1G026260.1 , HORVU0Hr1G026800.1 , HORVU7Hr1G107910.1 , HORVU5Hr1G064720.1 , HORVU2Hr1G062240.1 , HORVU0Hr1G032920.1 , HORVU6Hr1G049450.1 , HORVU5Hr1G064990.1 , HORVU4Hr1G050450.1 , HORVU4Hr1G050450.2 , HORVU0Hr1G033700.1 , AGP50790 , HORVU0Hr1G028360.1 , HORVU0Hr1G035280.1 , HORVU7Hr1G065920.1 , HORVU6Hr1G037260.1
Wheat TraesCS5D02G456400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.K032300 uncharacterized protein ycf72, putative -
2 Sobic.003G172500 - -
3 Sobic.006G183100 RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed K10755: replication factor C subunit 2/4
4 Sobic.009G123100 - K02710: photosystem II PsbI protein
K02712: photosystem II PsbK protein
5 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I
6 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -
7 Sobic.010G052866 - K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
8 Sobic.004G087050 - -
9 Sobic.010G139200 photosystem II P680 chlorophyll A apoprotein, putative, expressed -
10 Sobic.007G145801 - K02712: photosystem II PsbK protein
11 Sobic.001G394532 - K02110: ATPF0C, F-type H+-transporting ATPase subunit c
12 Sobic.003G169100 photosystem II P680 chlorophyll A apoprotein, putative, expressed K02704: photosystem II CP47 chlorophyll apoprotein
13 Sobic.005G110493 - -
14 Sobic.003G168425 - K02963: RP-S18, MRPS18, small subunit ribosomal protein S18
15 Sobic.006G124800 - -
16 Sobic.009G148950 - -
17 Sobic.003G169200 chloroplast ATP synthase a chain precursor, putative, expressed K02108: ATPF0A, F-type H+-transporting ATPase subunit a
18 Sobic.003G168200 - -
19 Sobic.003G169300 chloroplast 30S ribosomal protein S2, putative, expressed K02967: RP-S2, MRPS2, small subunit ribosomal protein S2
20 Sobic.006G057050 - -


Gene co-expression network
sample Sobic006G124700 Sobic006G124700 SobicK032300 SobicK032300 Sobic006G124700--SobicK032300 Sobic003G172500 Sobic003G172500 Sobic006G124700--Sobic003G172500 Sobic006G183100 Sobic006G183100 Sobic006G124700--Sobic006G183100 Sobic009G123100 Sobic009G123100 Sobic006G124700--Sobic009G123100 Sobic001G230050 Sobic001G230050 Sobic006G124700--Sobic001G230050 Sobic010G206600 Sobic010G206600 Sobic006G124700--Sobic010G206600 Sobic010G052866 Sobic010G052866 Sobic006G124700--Sobic010G052866 Sobic004G087050 Sobic004G087050 Sobic006G124700--Sobic004G087050 Sobic010G139200 Sobic010G139200 Sobic006G124700--Sobic010G139200 SobicK032300--Sobic001G230050 SobicK032300--Sobic003G172500 SobicK032300--Sobic006G124700 SobicK032300--Sobic010G206600 SobicK032300--Sobic009G123100 SobicK032300--Sobic006G183100 SobicK032300--Sobic010G052866 Sobic006G124800 Sobic006G124800 SobicK032300--Sobic006G124800 Sobic003G169200 Sobic003G169200 SobicK032300--Sobic003G169200 Sobic003G172500--Sobic010G052866 Sobic003G172500--Sobic004G087050 Sobic003G172500--Sobic009G123100 Sobic003G172500--SobicK032300 Sobic003G172500--Sobic010G139200 Sobic005G110493 Sobic005G110493 Sobic003G172500--Sobic005G110493 Sobic003G172500--Sobic006G124700 Sobic003G168425 Sobic003G168425 Sobic003G172500--Sobic003G168425 Sobic003G169300 Sobic003G169300 Sobic003G172500--Sobic003G169300 Sobic006G183100--SobicK032300 Sobic006G183100--Sobic006G124700 Sobic006G183100--Sobic001G230050 Sobic006G183100--Sobic010G206600 Sobic006G183100--Sobic003G172500 Sobic006G183100--Sobic009G123100 Sobic001G394532 Sobic001G394532 Sobic006G183100--Sobic001G394532 Sobic006G183100--Sobic006G124800 Sobic007G145801 Sobic007G145801 Sobic006G183100--Sobic007G145801 Sobic009G123100--Sobic003G172500 Sobic009G148950 Sobic009G148950 Sobic009G123100--Sobic009G148950 Sobic009G123100--Sobic004G087050 Sobic006G057050 Sobic006G057050 Sobic009G123100--Sobic006G057050 Sobic009G123100--SobicK032300 Sobic009G123100--Sobic007G145801 Sobic009G123100--Sobic006G124700 Sobic009G123100--Sobic010G139200 Sobic004G337850 Sobic004G337850 Sobic009G123100--Sobic004G337850 Sobic001G230050--SobicK032300 Sobic001G230050--Sobic003G169200 Sobic001G230050--Sobic010G206600 Sobic003G172600 Sobic003G172600 Sobic001G230050--Sobic003G172600 Sobic003G173116 Sobic003G173116 Sobic001G230050--Sobic003G173116 Sobic001G230050--Sobic001G394532 Sobic001G230050--Sobic006G183100 Sobic001G230050--Sobic003G172500 Sobic001G230050--Sobic006G124700 Sobic010G206600--Sobic001G394532 Sobic010G206600--Sobic001G230050 Sobic010G206600--Sobic003G169200 Sobic010G206600--SobicK032300 Sobic010G206600--Sobic006G183100 Sobic010G206600--Sobic006G124700 Sobic010G206600--Sobic003G172500 Sobic005G139900 Sobic005G139900 Sobic010G206600--Sobic005G139900 Sobic009G174150 Sobic009G174150 Sobic010G206600--Sobic009G174150 Sobic010G052866--Sobic003G172500 Sobic010G052866--Sobic003G169300 Sobic010G052866--Sobic005G110493 Sobic010G052866--SobicK032300 Sobic003G173266 Sobic003G173266 Sobic010G052866--Sobic003G173266 Sobic010G052866--Sobic004G087050 Sobic010G052866--Sobic003G168425 Sobic003G168800 Sobic003G168800 Sobic010G052866--Sobic003G168800 Sobic010G052866--Sobic001G230050 Sobic004G087050--Sobic010G139200 Sobic004G087050--Sobic003G168425 Sobic004G087050--Sobic005G110493 Sobic004G087050--Sobic003G172500 Sobic003G168200 Sobic003G168200 Sobic004G087050--Sobic003G168200 Sobic004G087050--Sobic009G123100 Sobic004G087050--Sobic003G169300 Sobic003G171900 Sobic003G171900 Sobic004G087050--Sobic003G171900 Sobic004G210400 Sobic004G210400 Sobic004G087050--Sobic004G210400 Sobic010G139200--Sobic004G087050 Sobic010G139200--Sobic003G168425 Sobic010G139200--Sobic005G110493 Sobic010G139200--Sobic003G172500 Sobic010G139200--Sobic003G168200 Sobic010G139200--Sobic004G210400 Sobic010G139200--Sobic003G169300 Sobic010G139200--SobicK032300 Sobic010G139200--Sobic009G123100
Octagon: transcription factors


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