Gene annotation
Transcriptome id Sobic.003G172300.1
Synonym Sb03g020160
Functional annotation photosystem II P680 chlorophyll A apoprotein, putative, expressed
UniProt C5XLE9
Pfam PF00421
Panther DB PTHR33180 PTHR33180:SF8
NCBI CDD -
KEGG Orthology K02704; photosystem II CP47 chlorophyll apoprotein
Gene Ontology GO:0016168; chlorophyll binding GO:0016020membrane GO:0009767photosynthetic electron transport chain GO:0009521photosystem


Orthologs (automatic annotation)
TAIR ATCG00680 : photosystem II reaction center protein B
RAP-DB (Rice) LOC_Os06g39708.1 : photosystem II P680 chlorophyll A apoprotein, putative, expressed
MaizeGDB (Corn) Zm00025a057693 , Zm00025a057579 , Zm00025a057835 , Zm00025a057666 , Zm00025a057608 , Zm00025a012507
Brachypodium KQK18187 , KQJ84939 , PNT67426 , KQK12113 , KQJ82569 , KQK12741 , KQJ90978
Barley HORVU1Hr1G003030.1 , HORVU0Hr1G029910.1 , HORVU0Hr1G029910.2 , HORVU2Hr1G084020.1 , HORVU3Hr1G004410.1 , HORVU0Hr1G034250.1 , HORVU0Hr1G034250.2 , HORVU6Hr1G049390.7 , HORVU6Hr1G049390.6 , HORVU6Hr1G049390.5 , HORVU6Hr1G049390.4 , HORVU6Hr1G049390.3 , HORVU6Hr1G049390.2 , HORVU5Hr1G065050.5 , HORVU5Hr1G065050.4 , HORVU5Hr1G065050.7 , HORVU5Hr1G065050.6 , HORVU5Hr1G065050.1 , HORVU5Hr1G065050.3 , HORVU5Hr1G065050.2 , HORVU1Hr1G023940.1 , HORVU1Hr1G039760.2 , HORVU1Hr1G039760.3 , HORVU1Hr1G039760.1 , AGP50780 , HORVU3Hr1G027570.2 , HORVU3Hr1G027570.3 , HORVU3Hr1G027570.1 , HORVU6Hr1G049390.1
Wheat TraesCS1D02G182600 , TraesCS3D02G053400 , TraesCS7B02G109800
Populus PNT08271 , PNT08266 , PNS96824 , PNT12914


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G172600 - -
2 Sobic.005G139900 chloroplast 30S ribosomal protein S7, putative, expressed K02992: RP-S7, MRPS7, small subunit ribosomal protein S7
3 Sobic.003G169200 chloroplast ATP synthase a chain precursor, putative, expressed K02108: ATPF0A, F-type H+-transporting ATPase subunit a
4 Sobic.003G173116 - K02724: photosystem II PsbZ protein
5 Sobic.003G053100 - -
6 Sobic.005G104900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.007G183200 down-regulated TF in developmental senescence(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed K18486: heart-and neural crest derivatives-expressed protein 2
8 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -
9 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I
10 Sobic.007G145801 - K02712: photosystem II PsbK protein
11 Sobic.006G124800 - -
12 Sobic.001G530201 - -
13 Sobic.003G161900 - -
14 Sobic.005G139750 - -
15 Sobic.003G117850 - -
16 Sobic.K032300 uncharacterized protein ycf72, putative -
17 Sobic.009G174150 - -
18 Sobic.001G022700 cytochrome P450, putative, expressed -
19 Sobic.001G535850 - -
20 Sobic.006G016950 - -


Gene co-expression network
sample Sobic003G172300 Sobic003G172300 Sobic003G172600 Sobic003G172600 Sobic003G172300--Sobic003G172600 Sobic005G139900 Sobic005G139900 Sobic003G172300--Sobic005G139900 Sobic003G169200 Sobic003G169200 Sobic003G172300--Sobic003G169200 Sobic003G173116 Sobic003G173116 Sobic003G172300--Sobic003G173116 Sobic003G053100 Sobic003G053100 Sobic003G172300--Sobic003G053100 Sobic005G104900 Sobic005G104900 Sobic003G172300--Sobic005G104900 Sobic007G183200 Sobic007G183200 Sobic003G172300--Sobic007G183200 Sobic010G206600 Sobic010G206600 Sobic003G172300--Sobic010G206600 Sobic001G230050 Sobic001G230050 Sobic003G172300--Sobic001G230050 Sobic003G172600--Sobic001G230050 Sobic006G124800 Sobic006G124800 Sobic003G172600--Sobic006G124800 Sobic003G172600--Sobic003G169200 SobicK032300 SobicK032300 Sobic003G172600--SobicK032300 Sobic003G172600--Sobic003G173116 Sobic003G172600--Sobic005G139900 Sobic003G117850 Sobic003G117850 Sobic003G172600--Sobic003G117850 Sobic003G172600--Sobic010G206600 Sobic001G530201 Sobic001G530201 Sobic003G172600--Sobic001G530201 Sobic005G139900--Sobic003G169200 Sobic005G139900--Sobic003G173116 Sobic004G303433 Sobic004G303433 Sobic005G139900--Sobic004G303433 Sobic001G535850 Sobic001G535850 Sobic005G139900--Sobic001G535850 Sobic005G139900--Sobic003G053100 Sobic005G139900--Sobic010G206600 Sobic005G139900--Sobic003G172600 Sobic005G139900--Sobic001G530201 Sobic005G139900--Sobic001G230050 Sobic003G169200--Sobic001G230050 Sobic003G169200--Sobic010G206600 Sobic003G169200--Sobic003G172600 Sobic003G169200--Sobic005G139900 Sobic003G169200--SobicK032300 Sobic001G394532 Sobic001G394532 Sobic003G169200--Sobic001G394532 Sobic003G169200--Sobic003G173116 Sobic003G169200--Sobic001G530201 Sobic003G159101 Sobic003G159101 Sobic003G169200--Sobic003G159101 Sobic003G173116--Sobic003G159101 Sobic003G173116--Sobic001G230050 Sobic003G173116--Sobic005G139900 Sobic009G174150 Sobic009G174150 Sobic003G173116--Sobic009G174150 Sobic003G173116--Sobic003G169200 Sobic003G173116--Sobic003G172600 Sobic003G173116--Sobic001G535850 Sobic003G173116--Sobic003G053100 Sobic003G173116--Sobic010G206600 Sobic003G053100--Sobic005G139900 Sobic003G053100--Sobic003G173116 Sobic003G053100--Sobic005G104900 Sobic003G053100--Sobic003G172600 Sobic003G053100--Sobic003G159101 Sobic003G053100--Sobic003G169200 Sobic003G053100--Sobic001G535850 Sobic003G053100--Sobic004G303433 Sobic003G053100--Sobic001G230050 Sobic005G104900--Sobic005G139900 Sobic005G139750 Sobic005G139750 Sobic005G104900--Sobic005G139750 Sobic005G104900--Sobic003G173116 Sobic005G104900--Sobic003G053100 Sobic003G161900 Sobic003G161900 Sobic005G104900--Sobic003G161900 Sobic005G104900--Sobic001G535850 Sobic005G104900--Sobic003G172600 Sobic001G022700 Sobic001G022700 Sobic005G104900--Sobic001G022700 Sobic004G077700 Sobic004G077700 Sobic005G104900--Sobic004G077700 Sobic002G358450 Sobic002G358450 Sobic007G183200--Sobic002G358450 Sobic010G201332 Sobic010G201332 Sobic007G183200--Sobic010G201332 Sobic001G261444 Sobic001G261444 Sobic007G183200--Sobic001G261444 Sobic007G183200--Sobic003G161900 Sobic005G065800 Sobic005G065800 Sobic007G183200--Sobic005G065800 SobicK032200 SobicK032200 Sobic007G183200--SobicK032200 Sobic001G475950 Sobic001G475950 Sobic007G183200--Sobic001G475950 Sobic009G143750 Sobic009G143750 Sobic007G183200--Sobic009G143750 Sobic001G383350 Sobic001G383350 Sobic007G183200--Sobic001G383350 Sobic010G206600--Sobic001G394532 Sobic010G206600--Sobic001G230050 Sobic010G206600--Sobic003G169200 Sobic010G206600--SobicK032300 Sobic006G183100 Sobic006G183100 Sobic010G206600--Sobic006G183100 Sobic006G124700 Sobic006G124700 Sobic010G206600--Sobic006G124700 Sobic003G172500 Sobic003G172500 Sobic010G206600--Sobic003G172500 Sobic010G206600--Sobic005G139900 Sobic010G206600--Sobic009G174150 Sobic001G230050--SobicK032300 Sobic001G230050--Sobic003G169200 Sobic001G230050--Sobic010G206600 Sobic001G230050--Sobic003G172600 Sobic001G230050--Sobic003G173116 Sobic001G230050--Sobic001G394532 Sobic001G230050--Sobic006G183100 Sobic001G230050--Sobic003G172500 Sobic001G230050--Sobic006G124700
Octagon: transcription factors


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