Gene annotation
Transcriptome id Sobic.009G227700.1
Synonym Sb09g028070
Functional annotation proteasome-related, putative, expressed
UniProt A0A097PSC8 , C5YVF7
Pfam PF10508
Panther DB PTHR13554
NCBI CDD KOG4413; 26S proteasome regulatory complex, subunit PSMD5
KEGG Orthology K06692; 26S proteasome non-ATPase regulatory subunit 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15180 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os05g48340.1 : proteasome-related, putative, expressed
MaizeGDB (Corn) Zm00025a044518
Brachypodium KQK04957
Barley HORVU1Hr1G085470.1 , HORVU1Hr1G085470.3 , HORVU1Hr1G085470.2
Wheat TraesCS1D02G395700 , TraesCS1D02G395700 , TraesCS1B02G415200 , TraesCS1A02G387700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.005G045700 PHD-finger family protein, expressed -
3 Sobic.005G139300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amidase, putative, expressed -
4 Sobic.005G036200 protein of unknown function containing protein, expressed -
5 Sobic.005G165800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SEY1, putative, expressed -
6 Sobic.001G125300 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
7 Sobic.006G262501 - -
8 Sobic.002G366300 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.010G131500 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
10 Sobic.009G250500 expressed protein -
11 Sobic.003G210000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G098800 osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
13 Sobic.007G192200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.003G140800 expressed protein -
15 Sobic.007G050900 - -
16 Sobic.002G391100 Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed K11188: peroxiredoxin 6
17 Sobic.003G437400 The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.003G100000 Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed K05350: beta-glucosidase
19 Sobic.003G419500 xylanase inhibitor, putative, expressed -
20 Sobic.010G152000 powdery mildew resistant protein 5, putative, expressed -


Gene co-expression network
sample Sobic009G227700 Sobic009G227700 Sobic009G012600 Sobic009G012600 Sobic009G227700--Sobic009G012600 Sobic005G045700 Sobic005G045700 Sobic009G227700--Sobic005G045700 Sobic005G139300 Sobic005G139300 Sobic009G227700--Sobic005G139300 Sobic005G036200 Sobic005G036200 Sobic009G227700--Sobic005G036200 Sobic005G165800 Sobic005G165800 Sobic009G227700--Sobic005G165800 Sobic001G125300 Sobic001G125300 Sobic009G227700--Sobic001G125300 Sobic006G262501 Sobic006G262501 Sobic009G227700--Sobic006G262501 Sobic002G366300 Sobic002G366300 Sobic009G227700--Sobic002G366300 Sobic010G131500 Sobic010G131500 Sobic009G227700--Sobic010G131500 Sobic007G050800 Sobic007G050800 Sobic009G012600--Sobic007G050800 Sobic009G012600--Sobic005G045700 Sobic006G226000 Sobic006G226000 Sobic009G012600--Sobic006G226000 Sobic007G192200 Sobic007G192200 Sobic009G012600--Sobic007G192200 Sobic009G002200 Sobic009G002200 Sobic009G012600--Sobic009G002200 Sobic009G012600--Sobic005G036200 Sobic010G037901 Sobic010G037901 Sobic009G012600--Sobic010G037901 Sobic009G012600--Sobic006G262501 Sobic008G191850 Sobic008G191850 Sobic009G012600--Sobic008G191850 Sobic002G127900 Sobic002G127900 Sobic005G045700--Sobic002G127900 Sobic007G053100 Sobic007G053100 Sobic005G045700--Sobic007G053100 Sobic002G266300 Sobic002G266300 Sobic005G045700--Sobic002G266300 Sobic002G054400 Sobic002G054400 Sobic005G045700--Sobic002G054400 Sobic003G368901 Sobic003G368901 Sobic005G045700--Sobic003G368901 Sobic005G045700--Sobic001G125300 Sobic005G045700--Sobic009G012600 Sobic005G045700--Sobic008G191850 Sobic005G045700--Sobic006G262501 Sobic007G050900 Sobic007G050900 Sobic005G139300--Sobic007G050900 Sobic005G139300--Sobic007G053100 Sobic003G419500 Sobic003G419500 Sobic005G139300--Sobic003G419500 Sobic009G060600 Sobic009G060600 Sobic005G139300--Sobic009G060600 Sobic005G139300--Sobic005G045700 Sobic005G139300--Sobic002G266300 Sobic009G250500 Sobic009G250500 Sobic005G139300--Sobic009G250500 Sobic002G010000 Sobic002G010000 Sobic005G139300--Sobic002G010000 Sobic005G139300--Sobic005G036200 Sobic005G036200--Sobic007G192200 Sobic002G420400 Sobic002G420400 Sobic005G036200--Sobic002G420400 Sobic005G036200--Sobic009G002200 Sobic001G375800 Sobic001G375800 Sobic005G036200--Sobic001G375800 Sobic010G054800 Sobic010G054800 Sobic005G036200--Sobic010G054800 Sobic001G456400 Sobic001G456400 Sobic005G036200--Sobic001G456400 Sobic005G036200--Sobic009G250500 Sobic004G242200 Sobic004G242200 Sobic005G036200--Sobic004G242200 Sobic005G036200--Sobic010G131500 Sobic001G396900 Sobic001G396900 Sobic005G165800--Sobic001G396900 Sobic004G114600 Sobic004G114600 Sobic005G165800--Sobic004G114600 Sobic006G208000 Sobic006G208000 Sobic005G165800--Sobic006G208000 Sobic006G034300 Sobic006G034300 Sobic005G165800--Sobic006G034300 Sobic002G413200 Sobic002G413200 Sobic005G165800--Sobic002G413200 Sobic004G281700 Sobic004G281700 Sobic005G165800--Sobic004G281700 Sobic001G044300 Sobic001G044300 Sobic005G165800--Sobic001G044300 Sobic005G165800--Sobic003G419500 Sobic005G165800--Sobic010G131500 Sobic003G098800 Sobic003G098800 Sobic001G125300--Sobic003G098800 Sobic003G437400 Sobic003G437400 Sobic001G125300--Sobic003G437400 Sobic001G380800 Sobic001G380800 Sobic001G125300--Sobic001G380800 Sobic004G301800 Sobic004G301800 Sobic001G125300--Sobic004G301800 Sobic003G295600 Sobic003G295600 Sobic001G125300--Sobic003G295600 Sobic002G393100 Sobic002G393100 Sobic001G125300--Sobic002G393100 Sobic001G125300--Sobic010G131500 Sobic010G142900 Sobic010G142900 Sobic001G125300--Sobic010G142900 Sobic006G053200 Sobic006G053200 Sobic001G125300--Sobic006G053200 Sobic006G262501--Sobic005G045700 Sobic006G262501--Sobic002G127900 Sobic006G262501--Sobic005G036200 Sobic008G118100 Sobic008G118100 Sobic006G262501--Sobic008G118100 Sobic006G262501--Sobic003G368901 Sobic006G262501--Sobic009G012600 Sobic006G262501--Sobic007G050800 Sobic006G262501--Sobic005G139300 Sobic010G175000 Sobic010G175000 Sobic006G262501--Sobic010G175000 Sobic010G179300 Sobic010G179300 Sobic002G366300--Sobic010G179300 Sobic001G125400 Sobic001G125400 Sobic002G366300--Sobic001G125400 Sobic005G147600 Sobic005G147600 Sobic002G366300--Sobic005G147600 Sobic007G025600 Sobic007G025600 Sobic002G366300--Sobic007G025600 Sobic006G083900 Sobic006G083900 Sobic002G366300--Sobic006G083900 Sobic006G167700 Sobic006G167700 Sobic002G366300--Sobic006G167700 Sobic009G103800 Sobic009G103800 Sobic002G366300--Sobic009G103800 Sobic002G184700 Sobic002G184700 Sobic002G366300--Sobic002G184700 Sobic001G534200 Sobic001G534200 Sobic002G366300--Sobic001G534200 Sobic010G131500--Sobic003G437400 Sobic010G131500--Sobic003G098800 Sobic010G131500--Sobic009G250500 Sobic003G051400 Sobic003G051400 Sobic010G131500--Sobic003G051400 Sobic001G058800 Sobic001G058800 Sobic010G131500--Sobic001G058800 Sobic010G131500--Sobic001G380800 Sobic003G398200 Sobic003G398200 Sobic010G131500--Sobic003G398200 Sobic006G248100 Sobic006G248100 Sobic010G131500--Sobic006G248100 Sobic010G131500--Sobic004G301800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.