Gene annotation
Transcriptome id Sobic.003G140800.1,Sobic.003G140800.2,Sobic.003G140800.3
Synonym Sb03g012000
Functional annotation expressed protein
UniProt A0A1W0VXA1 , C5XI25 , A0A1W0VX99
Pfam -
Panther DB PTHR12242 PTHR12242:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47115 : -
RAP-DB (Rice) LOC_Os07g46430.2,LOC_Os01g19120.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G074940 - -
2 Sobic.001G544400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@oleosin, putative, expressed -
3 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
4 Sobic.001G136400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Desulfoglucosinolate sulfotransferase (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
5 Sobic.001G380800 cupin domain containing protein, expressed -
6 Sobic.004G164800 poly synthetase 3, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
7 Sobic.005G147600 - -
8 Sobic.004G301800 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
9 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
10 Sobic.002G197700 -(PubMedID : 23108465)@ZOS4-05 - C2H2 zinc finger protein, expressed -
11 Sobic.003G437400 The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.006G248100 lipase, putative, expressed -
13 Sobic.009G037100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
14 Sobic.010G142900 oleosin, putative, expressed -
15 Sobic.002G401400 glyoxalase family protein, putative, expressed -
16 Sobic.001G534200 - -
17 Sobic.003G051400 cytochrome c oxidase polypeptide Vc, putative, expressed -
18 Sobic.001G058800 cysteine proteinase EP-B 1 precursor, putative, expressed -
19 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
20 Sobic.001G418500 glyoxalase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G140800 Sobic003G140800 Sobic010G074940 Sobic010G074940 Sobic003G140800--Sobic010G074940 Sobic001G544400 Sobic001G544400 Sobic003G140800--Sobic001G544400 Sobic002G393100 Sobic002G393100 Sobic003G140800--Sobic002G393100 Sobic001G136400 Sobic001G136400 Sobic003G140800--Sobic001G136400 Sobic001G380800 Sobic001G380800 Sobic003G140800--Sobic001G380800 Sobic004G164800 Sobic004G164800 Sobic003G140800--Sobic004G164800 Sobic005G147600 Sobic005G147600 Sobic003G140800--Sobic005G147600 Sobic004G301800 Sobic004G301800 Sobic003G140800--Sobic004G301800 Sobic001G208500 Sobic001G208500 Sobic003G140800--Sobic001G208500 Sobic001G418500 Sobic001G418500 Sobic010G074940--Sobic001G418500 Sobic010G074940--Sobic004G301800 Sobic010G074940--Sobic001G380800 Sobic010G142900 Sobic010G142900 Sobic010G074940--Sobic010G142900 Sobic010G074940--Sobic002G393100 Sobic002G401400 Sobic002G401400 Sobic010G074940--Sobic002G401400 Sobic010G074940--Sobic001G544400 Sobic010G074940--Sobic004G164800 Sobic003G295600 Sobic003G295600 Sobic010G074940--Sobic003G295600 Sobic001G544400--Sobic010G142900 Sobic001G544400--Sobic001G380800 Sobic001G544400--Sobic004G301800 Sobic001G544400--Sobic003G295600 Sobic001G544400--Sobic001G418500 Sobic003G283700 Sobic003G283700 Sobic001G544400--Sobic003G283700 Sobic001G544400--Sobic002G401400 Sobic003G144500 Sobic003G144500 Sobic001G544400--Sobic003G144500 Sobic001G126900 Sobic001G126900 Sobic001G544400--Sobic001G126900 Sobic002G393100--Sobic001G208500 Sobic002G393100--Sobic004G164800 Sobic002G197700 Sobic002G197700 Sobic002G393100--Sobic002G197700 Sobic003G372600 Sobic003G372600 Sobic002G393100--Sobic003G372600 Sobic009G037100 Sobic009G037100 Sobic002G393100--Sobic009G037100 Sobic008G159000 Sobic008G159000 Sobic002G393100--Sobic008G159000 Sobic006G248100 Sobic006G248100 Sobic002G393100--Sobic006G248100 Sobic002G211300 Sobic002G211300 Sobic002G393100--Sobic002G211300 Sobic002G393100--Sobic001G380800 Sobic009G014800 Sobic009G014800 Sobic001G136400--Sobic009G014800 Sobic009G012500 Sobic009G012500 Sobic001G136400--Sobic009G012500 Sobic001G203350 Sobic001G203350 Sobic001G136400--Sobic001G203350 Sobic010G053400 Sobic010G053400 Sobic001G136400--Sobic010G053400 Sobic002G240000 Sobic002G240000 Sobic001G136400--Sobic002G240000 Sobic008G149300 Sobic008G149300 Sobic001G136400--Sobic008G149300 Sobic009G246250 Sobic009G246250 Sobic001G136400--Sobic009G246250 Sobic006G083900 Sobic006G083900 Sobic001G136400--Sobic006G083900 Sobic001G136400--Sobic002G197700 Sobic001G380800--Sobic004G301800 Sobic001G380800--Sobic010G142900 Sobic001G380800--Sobic003G295600 Sobic001G380800--Sobic001G418500 Sobic003G437400 Sobic003G437400 Sobic001G380800--Sobic003G437400 Sobic001G380800--Sobic002G401400 Sobic001G380800--Sobic001G126900 Sobic001G380800--Sobic002G393100 Sobic003G098800 Sobic003G098800 Sobic001G380800--Sobic003G098800 Sobic004G164800--Sobic009G037100 Sobic004G164800--Sobic002G393100 Sobic004G164800--Sobic001G208500 Sobic004G164800--Sobic003G372600 Sobic004G164800--Sobic002G211300 Sobic004G164800--Sobic008G159000 Sobic004G164800--Sobic002G197700 Sobic010G125000 Sobic010G125000 Sobic004G164800--Sobic010G125000 Sobic004G164800--Sobic006G248100 Sobic001G165600 Sobic001G165600 Sobic005G147600--Sobic001G165600 Sobic005G147600--Sobic010G125000 Sobic005G147600--Sobic002G211300 Sobic005G147600--Sobic002G197700 Sobic005G147600--Sobic008G159000 Sobic006G167700 Sobic006G167700 Sobic005G147600--Sobic006G167700 Sobic004G000900 Sobic004G000900 Sobic005G147600--Sobic004G000900 Sobic005G147600--Sobic003G372600 Sobic004G134801 Sobic004G134801 Sobic005G147600--Sobic004G134801 Sobic004G301800--Sobic001G380800 Sobic004G301800--Sobic010G142900 Sobic004G301800--Sobic003G295600 Sobic004G301800--Sobic001G418500 Sobic004G281700 Sobic004G281700 Sobic004G301800--Sobic004G281700 Sobic004G301800--Sobic003G283700 Sobic004G301800--Sobic003G098800 Sobic004G301800--Sobic002G401400 Sobic004G301800--Sobic003G437400 Sobic001G208500--Sobic003G372600 Sobic001G208500--Sobic002G393100 Sobic001G208500--Sobic004G164800 Sobic001G208500--Sobic002G211300 Sobic001G208500--Sobic008G159000 Sobic002G184700 Sobic002G184700 Sobic001G208500--Sobic002G184700 Sobic001G208500--Sobic009G037100 Sobic001G208500--Sobic006G248100 Sobic001G208500--Sobic002G197700
Octagon: transcription factors


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