Gene annotation
Transcriptome id Sobic.001G038800.1
Synonym WAVE4, DIS3, ITB1, Sb01g003570, SCAR2, ATSCAR2
Functional annotation SCAR-like protein 1, putative, expressed
UniProt C5WV54
Pfam -
Panther DB PTHR12902 PTHR12902:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005856; cytoskeleton


Orthologs (automatic annotation)
TAIR AT2G38440 : SCAR homolog 2
RAP-DB (Rice) LOC_Os03g60240.1 : SCAR-like protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a008758
Brachypodium PNT73909 , KQK12486 , KQK12484 , KQK12485
Barley HORVU0Hr1G014100.3 , HORVU0Hr1G014100.1 , HORVU0Hr1G014100.2 , HORVU0Hr1G014110.1 , HORVU0Hr1G014110.3 , HORVU0Hr1G014110.2 , HORVU0Hr1G014110.5 , HORVU0Hr1G014110.4
Wheat TraesCS5A02G472100 , TraesCS5B02G484800 , TraesCS5D02G484800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G408500 alpha-taxilin, putative, expressed -
2 Sobic.004G208301 - K15429: TRM5, tRNA (guanine37-N1)-methyltransferase
3 Sobic.007G118400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
4 Sobic.001G095800 XRCC4, putative, expressed K10886: DNA-repair protein XRCC4
5 Sobic.002G139700 tubulin binding cofactor C, putative, expressed -
6 Sobic.005G068300 - -
7 Sobic.009G196900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA"(PubMedID : 20499123)@down-regulated TF in developmental senescence(PubMedID : 27586543)@auxin response factor 14, putative, expressed K14486: K14486, auxin response factor
8 Sobic.006G063800 HIRAN domain containing protein, putative, expressed -
9 Sobic.006G138600 DIE2/ALG10 family, putative, expressed K03850: alpha-1,2-glucosyltransferase
10 Sobic.003G337200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat-containing protein, putative, expressed -
11 Sobic.005G096500 - -
12 Sobic.001G176700 CBS domain containing protein, expressed -
13 Sobic.007G201200 thaumatin, putative, expressed -
14 Sobic.010G125700 HEAT repeat family protein, putative, expressed K06699: proteasome activator subunit 4
15 Sobic.003G154200 serine carboxypeptidase, putative, expressed K16297: serine carboxypeptidase-like clade II
16 Sobic.004G268600 nodulin, putative, expressed -
17 Sobic.003G089700 - -
18 Sobic.001G126500 - -
19 Sobic.002G104600 Ser/Thr protein phosphatase family protein, putative, expressed -
20 Sobic.002G403700 condensin complex subunit 1, putative, expressed K06677: YCS4, CNAP1, condensin complex subunit 1


Gene co-expression network
sample Sobic001G038800 Sobic001G038800 Sobic001G408500 Sobic001G408500 Sobic001G038800--Sobic001G408500 Sobic004G208301 Sobic004G208301 Sobic001G038800--Sobic004G208301 Sobic007G118400 Sobic007G118400 Sobic001G038800--Sobic007G118400 Sobic001G095800 Sobic001G095800 Sobic001G038800--Sobic001G095800 Sobic002G139700 Sobic002G139700 Sobic001G038800--Sobic002G139700 Sobic005G068300 Sobic005G068300 Sobic001G038800--Sobic005G068300 Sobic009G196900 Sobic009G196900 Sobic001G038800--Sobic009G196900 Sobic006G063800 Sobic006G063800 Sobic001G038800--Sobic006G063800 Sobic006G138600 Sobic006G138600 Sobic001G038800--Sobic006G138600 Sobic001G408500--Sobic002G139700 Sobic001G408500--Sobic001G038800 Sobic007G005200 Sobic007G005200 Sobic001G408500--Sobic007G005200 Sobic004G112800 Sobic004G112800 Sobic001G408500--Sobic004G112800 Sobic001G408500--Sobic004G208301 Sobic001G408500--Sobic005G068300 Sobic003G124000 Sobic003G124000 Sobic001G408500--Sobic003G124000 Sobic009G051500 Sobic009G051500 Sobic001G408500--Sobic009G051500 Sobic001G408500--Sobic001G095800 Sobic004G268600 Sobic004G268600 Sobic004G208301--Sobic004G268600 Sobic003G160300 Sobic003G160300 Sobic004G208301--Sobic003G160300 Sobic003G160433 Sobic003G160433 Sobic004G208301--Sobic003G160433 Sobic007G085900 Sobic007G085900 Sobic004G208301--Sobic007G085900 Sobic001G054050 Sobic001G054050 Sobic004G208301--Sobic001G054050 Sobic001G128000 Sobic001G128000 Sobic004G208301--Sobic001G128000 Sobic002G390200 Sobic002G390200 Sobic004G208301--Sobic002G390200 Sobic003G337200 Sobic003G337200 Sobic004G208301--Sobic003G337200 Sobic009G192200 Sobic009G192200 Sobic004G208301--Sobic009G192200 Sobic007G118400--Sobic004G208301 Sobic007G123700 Sobic007G123700 Sobic007G118400--Sobic007G123700 Sobic007G118400--Sobic003G337200 Sobic003G172450 Sobic003G172450 Sobic007G118400--Sobic003G172450 Sobic006G139200 Sobic006G139200 Sobic007G118400--Sobic006G139200 Sobic007G118400--Sobic005G068300 Sobic010G107901 Sobic010G107901 Sobic007G118400--Sobic010G107901 Sobic002G397700 Sobic002G397700 Sobic007G118400--Sobic002G397700 Sobic007G118400--Sobic004G268600 Sobic004G107550 Sobic004G107550 Sobic001G095800--Sobic004G107550 Sobic006G102200 Sobic006G102200 Sobic001G095800--Sobic006G102200 Sobic004G116900 Sobic004G116900 Sobic001G095800--Sobic004G116900 Sobic005G118900 Sobic005G118900 Sobic001G095800--Sobic005G118900 Sobic003G130200 Sobic003G130200 Sobic001G095800--Sobic003G130200 Sobic005G002050 Sobic005G002050 Sobic001G095800--Sobic005G002050 Sobic002G150200 Sobic002G150200 Sobic001G095800--Sobic002G150200 Sobic004G210400 Sobic004G210400 Sobic001G095800--Sobic004G210400 Sobic004G007133 Sobic004G007133 Sobic001G095800--Sobic004G007133 Sobic002G139700--Sobic001G408500 Sobic006G141100 Sobic006G141100 Sobic002G139700--Sobic006G141100 Sobic002G139700--Sobic005G118900 Sobic002G139700--Sobic005G068300 Sobic002G139700--Sobic001G095800 Sobic002G139700--Sobic009G051500 Sobic002G139700--Sobic007G005200 Sobic002G139700--Sobic003G124000 Sobic002G139700--Sobic004G268600 Sobic005G068300--Sobic003G172450 Sobic005G068300--Sobic010G107901 Sobic004G234766 Sobic004G234766 Sobic005G068300--Sobic004G234766 Sobic005G068300--Sobic002G397700 Sobic006G093550 Sobic006G093550 Sobic005G068300--Sobic006G093550 Sobic005G068300--Sobic003G337200 Sobic010G225400 Sobic010G225400 Sobic005G068300--Sobic010G225400 Sobic001G249900 Sobic001G249900 Sobic005G068300--Sobic001G249900 Sobic005G030266 Sobic005G030266 Sobic005G068300--Sobic005G030266 Sobic001G011100 Sobic001G011100 Sobic009G196900--Sobic001G011100 Sobic008G183000 Sobic008G183000 Sobic009G196900--Sobic008G183000 Sobic009G196900--Sobic006G063800 Sobic009G120850 Sobic009G120850 Sobic009G196900--Sobic009G120850 Sobic006G260700 Sobic006G260700 Sobic009G196900--Sobic006G260700 Sobic008G174400 Sobic008G174400 Sobic009G196900--Sobic008G174400 Sobic002G079200 Sobic002G079200 Sobic009G196900--Sobic002G079200 Sobic003G383200 Sobic003G383200 Sobic009G196900--Sobic003G383200 Sobic002G373500 Sobic002G373500 Sobic009G196900--Sobic002G373500 Sobic002G403700 Sobic002G403700 Sobic006G063800--Sobic002G403700 Sobic002G104600 Sobic002G104600 Sobic006G063800--Sobic002G104600 Sobic006G063800--Sobic003G383200 Sobic006G063800--Sobic009G196900 Sobic002G190400 Sobic002G190400 Sobic006G063800--Sobic002G190400 Sobic009G211100 Sobic009G211100 Sobic006G063800--Sobic009G211100 Sobic005G008400 Sobic005G008400 Sobic006G063800--Sobic005G008400 Sobic008G035633 Sobic008G035633 Sobic006G063800--Sobic008G035633 Sobic001G365332 Sobic001G365332 Sobic006G063800--Sobic001G365332 Sobic001G098100 Sobic001G098100 Sobic006G138600--Sobic001G098100 Sobic010G125700 Sobic010G125700 Sobic006G138600--Sobic010G125700 Sobic005G008500 Sobic005G008500 Sobic006G138600--Sobic005G008500 Sobic006G027200 Sobic006G027200 Sobic006G138600--Sobic006G027200 Sobic009G038600 Sobic009G038600 Sobic006G138600--Sobic009G038600 Sobic006G138600--Sobic001G408500 Sobic010G051200 Sobic010G051200 Sobic006G138600--Sobic010G051200 Sobic006G223200 Sobic006G223200 Sobic006G138600--Sobic006G223200 Sobic006G138600--Sobic007G118400
Octagon: transcription factors


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