Gene annotation
Transcriptome id Sobic.009G196900.2,Sobic.009G196900.1,Sobic.009G196900.3
Synonym SbARF20, ARF3, auxin response factor, SbARF20;auxin response factor, Sb09g025500, ETT
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA" (PubMedID : 20499123)
down-regulated TF in developmental senescence (PubMedID : 27586543)
auxin response factor 14, putative, expressed
UniProt C5Z0X8 , A0A1B6P9I2
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF23
NCBI CDD -
KEGG Orthology K14486; K14486, auxin response factor
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G33860 : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
RAP-DB (Rice) LOC_Os05g43920.1 : auxin response factor 14, putative, expressed
MaizeGDB (Corn) Zm00025a040034 , Zm00025a027541 , Zm00025a044223
Brachypodium PNT70920 , KQK05398 , KQK05397
Barley HORVU1Hr1G076690.26 , HORVU1Hr1G076690.27 , HORVU1Hr1G076690.24 , HORVU1Hr1G076690.25 , HORVU1Hr1G076690.22 , HORVU1Hr1G076690.23 , HORVU1Hr1G076690.20 , HORVU1Hr1G076690.21 , HORVU1Hr1G076690.28 , HORVU1Hr1G076690.29 , HORVU1Hr1G076690.9 , HORVU1Hr1G076690.8 , HORVU1Hr1G076690.19 , HORVU1Hr1G076690.18 , HORVU1Hr1G076690.17 , HORVU1Hr1G076690.16 , HORVU1Hr1G076690.15 , HORVU1Hr1G076690.14 , HORVU1Hr1G076690.13 , HORVU1Hr1G076690.12 , HORVU1Hr1G076690.11 , HORVU1Hr1G076690.10 , HORVU1Hr1G076690.31 , HORVU1Hr1G076690.30 , HORVU1Hr1G076690.7 , HORVU1Hr1G076690.6 , HORVU1Hr1G076690.5 , HORVU1Hr1G076690.4 , HORVU1Hr1G076690.2 , HORVU1Hr1G076690.1
Wheat TraesCS1A02G334900 , TraesCS1B02G347900 , TraesCS1B02G347900 , TraesCS1D02G337400
Populus -


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cDNA sequences
Sobic.009G196900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G011100 - -
2 Sobic.008G183000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
3 Sobic.006G063800 HIRAN domain containing protein, putative, expressed -
4 Sobic.009G120850 - -
5 Sobic.006G260700 cysteine protease, putative, expressed -
6 Sobic.008G174400 OsFBX464 - F-box domain containing protein, expressed -
7 Sobic.002G079200 EF hand family protein, putative, expressed K02183: calmodulin
8 Sobic.003G383200 expressed protein -
9 Sobic.002G373500 OsFBX152 - F-box domain containing protein, expressed -
10 Sobic.007G080660 - -
11 Sobic.002G190400 ZOS9-05 - C2H2 zinc finger protein, expressed -
12 Sobic.005G134301 - -
13 Sobic.001G195400 - -
14 Sobic.002G191200 OsFBX55 - F-box domain containing protein, expressed -
15 Sobic.005G083932 - -
16 Sobic.001G317900 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.001G317900 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.001G317900 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.001G317900 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.002G288800 serine/threonine-protein kinase receptor precursor, putative, expressed -


Gene co-expression network
sample Sobic009G196900 Sobic009G196900 Sobic001G011100 Sobic001G011100 Sobic009G196900--Sobic001G011100 Sobic008G183000 Sobic008G183000 Sobic009G196900--Sobic008G183000 Sobic006G063800 Sobic006G063800 Sobic009G196900--Sobic006G063800 Sobic009G120850 Sobic009G120850 Sobic009G196900--Sobic009G120850 Sobic006G260700 Sobic006G260700 Sobic009G196900--Sobic006G260700 Sobic008G174400 Sobic008G174400 Sobic009G196900--Sobic008G174400 Sobic002G079200 Sobic002G079200 Sobic009G196900--Sobic002G079200 Sobic003G383200 Sobic003G383200 Sobic009G196900--Sobic003G383200 Sobic002G373500 Sobic002G373500 Sobic009G196900--Sobic002G373500 Sobic001G011100--Sobic008G174400 Sobic001G011100--Sobic002G373500 Sobic002G277000 Sobic002G277000 Sobic001G011100--Sobic002G277000 Sobic007G080660 Sobic007G080660 Sobic001G011100--Sobic007G080660 Sobic005G083932 Sobic005G083932 Sobic001G011100--Sobic005G083932 Sobic001G317900 Sobic001G317900 Sobic001G011100--Sobic001G317900 Sobic008G183000--Sobic002G373500 Sobic008G183000--Sobic008G174400 Sobic008G183000--Sobic001G317900 Sobic008G183000--Sobic005G083932 Sobic002G191200 Sobic002G191200 Sobic008G183000--Sobic002G191200 Sobic008G183000--Sobic001G011100 Sobic002G403700 Sobic002G403700 Sobic006G063800--Sobic002G403700 Sobic002G104600 Sobic002G104600 Sobic006G063800--Sobic002G104600 Sobic006G063800--Sobic003G383200 Sobic006G063800--Sobic009G196900 Sobic002G190400 Sobic002G190400 Sobic006G063800--Sobic002G190400 Sobic009G211100 Sobic009G211100 Sobic006G063800--Sobic009G211100 Sobic005G008400 Sobic005G008400 Sobic006G063800--Sobic005G008400 Sobic008G035633 Sobic008G035633 Sobic006G063800--Sobic008G035633 Sobic001G365332 Sobic001G365332 Sobic006G063800--Sobic001G365332 Sobic003G409850 Sobic003G409850 Sobic009G120850--Sobic003G409850 Sobic009G120850--Sobic001G317900 Sobic009G120850--Sobic005G083932 Sobic009G120850--Sobic008G174400 Sobic009G120850--Sobic002G191200 Sobic009G120850--Sobic002G373500 Sobic006G260700--Sobic008G183000 Sobic006G260700--Sobic001G011100 Sobic006G260700--Sobic002G373500 Sobic006G260700--Sobic008G174400 Sobic010G127500 Sobic010G127500 Sobic006G260700--Sobic010G127500 Sobic006G030250 Sobic006G030250 Sobic006G260700--Sobic006G030250 Sobic006G260700--Sobic001G317900 Sobic008G174400--Sobic001G317900 Sobic008G174400--Sobic002G373500 Sobic008G174400--Sobic005G083932 Sobic008G174400--Sobic002G191200 Sobic008G174400--Sobic010G127500 Sobic008G174400--Sobic007G080660 Sobic002G079200--Sobic001G317900 Sobic002G079200--Sobic008G174400 Sobic002G079200--Sobic005G083932 Sobic002G079200--Sobic002G373500 Sobic002G079200--Sobic002G191200 Sobic002G079200--Sobic007G080660 Sobic005G057201 Sobic005G057201 Sobic003G383200--Sobic005G057201 Sobic001G059150 Sobic001G059150 Sobic003G383200--Sobic001G059150 Sobic003G200400 Sobic003G200400 Sobic003G383200--Sobic003G200400 Sobic003G159300 Sobic003G159300 Sobic003G383200--Sobic003G159300 Sobic006G145650 Sobic006G145650 Sobic003G383200--Sobic006G145650 Sobic004G013900 Sobic004G013900 Sobic003G383200--Sobic004G013900 Sobic001G234733 Sobic001G234733 Sobic003G383200--Sobic001G234733 Sobic003G383200--Sobic005G008400 Sobic010G214950 Sobic010G214950 Sobic003G383200--Sobic010G214950 Sobic002G373500--Sobic008G174400 Sobic002G373500--Sobic001G317900 Sobic002G373500--Sobic005G083932 Sobic002G373500--Sobic002G191200 Sobic002G373500--Sobic010G127500 Sobic002G373500--Sobic007G080660
Octagon: transcription factors


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