Gene annotation
Transcriptome id Sobic.006G260700.1
Synonym Sb06g032360
Functional annotation cysteine protease, putative, expressed
UniProt C5YA39
Pfam PF00396 PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF378
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT3G19390 : Granulin repeat cysteine protease family protein
RAP-DB (Rice) LOC_Os04g57440.1 : oryzain beta chain precursor, putative, expressed
MaizeGDB (Corn) Zm00025a005623 , Zm00025a016788
Brachypodium KQJ90836 , PNT62108
Barley HORVU5Hr1G074780.3 , HORVU5Hr1G074780.2 , HORVU5Hr1G074780.1 , HORVU7Hr1G055310.2 , HORVU7Hr1G055310.1 , HORVU3Hr1G091800.1 , HORVU2Hr1G121150.1
Wheat TraesCS7A02G264200 , TraesCS5B02G274600 , TraesCS3D02G342100 , TraesCS7D02G265100 , TraesCS7B02G162200 , TraesCS5D02G149800 , TraesCS5D02G282500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G183000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
2 Sobic.001G011100 - -
3 Sobic.002G373500 OsFBX152 - F-box domain containing protein, expressed -
4 Sobic.008G174400 OsFBX464 - F-box domain containing protein, expressed -
5 Sobic.010G127500 hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.006G030250 - -
7 Sobic.001G317900 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.001G317900 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.001G317900 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.001G317900 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.005G083932 - -
12 Sobic.007G115050 - -
13 Sobic.002G191200 OsFBX55 - F-box domain containing protein, expressed -
14 Sobic.002G079200 EF hand family protein, putative, expressed K02183: calmodulin
15 Sobic.001G417100 - -
16 Sobic.007G080660 - -
17 Sobic.008G091100 - -
18 Sobic.001G260900 - -
19 Sobic.004G087432 - -
20 Sobic.005G145000 expressed protein -


Gene co-expression network
sample Sobic006G260700 Sobic006G260700 Sobic008G183000 Sobic008G183000 Sobic006G260700--Sobic008G183000 Sobic001G011100 Sobic001G011100 Sobic006G260700--Sobic001G011100 Sobic002G373500 Sobic002G373500 Sobic006G260700--Sobic002G373500 Sobic008G174400 Sobic008G174400 Sobic006G260700--Sobic008G174400 Sobic010G127500 Sobic010G127500 Sobic006G260700--Sobic010G127500 Sobic006G030250 Sobic006G030250 Sobic006G260700--Sobic006G030250 Sobic001G317900 Sobic001G317900 Sobic006G260700--Sobic001G317900 Sobic008G183000--Sobic002G373500 Sobic008G183000--Sobic008G174400 Sobic008G183000--Sobic001G317900 Sobic005G083932 Sobic005G083932 Sobic008G183000--Sobic005G083932 Sobic002G191200 Sobic002G191200 Sobic008G183000--Sobic002G191200 Sobic008G183000--Sobic001G011100 Sobic001G011100--Sobic008G174400 Sobic001G011100--Sobic002G373500 Sobic002G277000 Sobic002G277000 Sobic001G011100--Sobic002G277000 Sobic007G080660 Sobic007G080660 Sobic001G011100--Sobic007G080660 Sobic001G011100--Sobic005G083932 Sobic001G011100--Sobic001G317900 Sobic002G373500--Sobic008G174400 Sobic002G373500--Sobic001G317900 Sobic002G373500--Sobic005G083932 Sobic002G373500--Sobic002G191200 Sobic002G373500--Sobic010G127500 Sobic002G373500--Sobic007G080660 Sobic008G174400--Sobic001G317900 Sobic008G174400--Sobic002G373500 Sobic008G174400--Sobic005G083932 Sobic008G174400--Sobic002G191200 Sobic008G174400--Sobic010G127500 Sobic008G174400--Sobic007G080660 Sobic010G127500--Sobic006G030250 Sobic010G127500--Sobic001G317900 Sobic010G127500--Sobic005G083932 Sobic010G127500--Sobic008G174400 Sobic010G127500--Sobic002G191200 Sobic010G127500--Sobic002G373500 Sobic006G030250--Sobic010G127500 Sobic006G030250--Sobic001G317900 Sobic006G030250--Sobic005G083932 Sobic006G030250--Sobic008G174400 Sobic006G030250--Sobic002G191200 Sobic006G030250--Sobic002G373500 Sobic001G317900--Sobic001G317900 Sobic001G317900--Sobic005G083932 Sobic001G317900--Sobic008G174400 Sobic001G317900--Sobic002G191200 Sobic001G317900--Sobic002G373500 Sobic001G317900--Sobic010G127500 Sobic001G317900--Sobic007G080660
Octagon: transcription factors


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