Gene annotation
Transcriptome id Sobic.005G027680.1
Synonym -
Functional annotation -
UniProt A0A1Z5RGE5
Pfam PF12854 PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G62910 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g35260.1 : Rf1, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G020000 pentatricopeptide, putative, expressed -
2 Sobic.003G368901 - -
3 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.004G020100 division protein, putative, expressed -
5 Sobic.007G017200 OsFBX142 - F-box domain containing protein, expressed -
6 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
7 Sobic.001G033900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
9 Sobic.002G155100 bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed K12524: bifunctional aspartokinase / homoserine dehydrogenase 1
10 Sobic.010G003900 arginine N-methyltransferase 7, putative, expressed K11438: type III protein arginine methyltransferase
11 Sobic.007G082000 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
13 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
14 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.003G049600 CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
16 Sobic.003G214700 transcriptional corepressor LEUNIG, putative, expressed -
17 Sobic.006G193500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
19 Sobic.006G262501 - -
20 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1


Gene co-expression network
sample Sobic005G027680 Sobic005G027680 Sobic005G020000 Sobic005G020000 Sobic005G027680--Sobic005G020000 Sobic003G368901 Sobic003G368901 Sobic005G027680--Sobic003G368901 Sobic010G032300 Sobic010G032300 Sobic005G027680--Sobic010G032300 Sobic004G020100 Sobic004G020100 Sobic005G027680--Sobic004G020100 Sobic007G017200 Sobic007G017200 Sobic005G027680--Sobic007G017200 Sobic003G161800 Sobic003G161800 Sobic005G027680--Sobic003G161800 Sobic001G033900 Sobic001G033900 Sobic005G027680--Sobic001G033900 Sobic001G034500 Sobic001G034500 Sobic005G027680--Sobic001G034500 Sobic002G155100 Sobic002G155100 Sobic005G027680--Sobic002G155100 Sobic002G105101 Sobic002G105101 Sobic005G020000--Sobic002G105101 Sobic001G346900 Sobic001G346900 Sobic005G020000--Sobic001G346900 Sobic006G223400 Sobic006G223400 Sobic005G020000--Sobic006G223400 Sobic008G147200 Sobic008G147200 Sobic005G020000--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic005G020000--Sobic005G137700 Sobic005G108000 Sobic005G108000 Sobic005G020000--Sobic005G108000 Sobic005G020000--Sobic010G032300 Sobic002G422100 Sobic002G422100 Sobic005G020000--Sobic002G422100 Sobic003G409200 Sobic003G409200 Sobic005G020000--Sobic003G409200 Sobic005G045700 Sobic005G045700 Sobic003G368901--Sobic005G045700 Sobic002G127900 Sobic002G127900 Sobic003G368901--Sobic002G127900 Sobic006G262501 Sobic006G262501 Sobic003G368901--Sobic006G262501 Sobic008G165300 Sobic008G165300 Sobic003G368901--Sobic008G165300 Sobic005G139300 Sobic005G139300 Sobic003G368901--Sobic005G139300 Sobic010G264900 Sobic010G264900 Sobic003G368901--Sobic010G264900 Sobic004G031300 Sobic004G031300 Sobic003G368901--Sobic004G031300 Sobic002G266300 Sobic002G266300 Sobic003G368901--Sobic002G266300 Sobic007G053100 Sobic007G053100 Sobic003G368901--Sobic007G053100 Sobic004G342300 Sobic004G342300 Sobic010G032300--Sobic004G342300 Sobic006G140400 Sobic006G140400 Sobic010G032300--Sobic006G140400 Sobic006G274100 Sobic006G274100 Sobic010G032300--Sobic006G274100 Sobic010G224700 Sobic010G224700 Sobic010G032300--Sobic010G224700 Sobic006G059500 Sobic006G059500 Sobic010G032300--Sobic006G059500 Sobic002G132600 Sobic002G132600 Sobic010G032300--Sobic002G132600 Sobic009G211200 Sobic009G211200 Sobic010G032300--Sobic009G211200 Sobic003G259600 Sobic003G259600 Sobic010G032300--Sobic003G259600 Sobic005G028300 Sobic005G028300 Sobic010G032300--Sobic005G028300 Sobic003G010900 Sobic003G010900 Sobic004G020100--Sobic003G010900 Sobic001G123600 Sobic001G123600 Sobic004G020100--Sobic001G123600 Sobic002G076500 Sobic002G076500 Sobic004G020100--Sobic002G076500 Sobic001G229300 Sobic001G229300 Sobic004G020100--Sobic001G229300 Sobic009G032200 Sobic009G032200 Sobic004G020100--Sobic009G032200 Sobic003G432800 Sobic003G432800 Sobic004G020100--Sobic003G432800 Sobic001G051400 Sobic001G051400 Sobic004G020100--Sobic001G051400 Sobic002G296400 Sobic002G296400 Sobic004G020100--Sobic002G296400 Sobic006G191200 Sobic006G191200 Sobic004G020100--Sobic006G191200 Sobic007G017200--Sobic001G033900 Sobic007G017200--Sobic006G140400 Sobic001G004100 Sobic001G004100 Sobic007G017200--Sobic001G004100 Sobic007G017200--Sobic004G031300 Sobic001G013300 Sobic001G013300 Sobic007G017200--Sobic001G013300 Sobic006G245900 Sobic006G245900 Sobic007G017200--Sobic006G245900 Sobic007G017200--Sobic003G259600 Sobic007G016900 Sobic007G016900 Sobic007G017200--Sobic007G016900 Sobic007G017200--Sobic004G020100 Sobic002G254800 Sobic002G254800 Sobic003G161800--Sobic002G254800 Sobic001G373000 Sobic001G373000 Sobic003G161800--Sobic001G373000 Sobic009G030400 Sobic009G030400 Sobic003G161800--Sobic009G030400 Sobic006G179400 Sobic006G179400 Sobic003G161800--Sobic006G179400 Sobic003G180100 Sobic003G180100 Sobic003G161800--Sobic003G180100 Sobic010G236200 Sobic010G236200 Sobic003G161800--Sobic010G236200 Sobic005G030100 Sobic005G030100 Sobic003G161800--Sobic005G030100 Sobic009G113100 Sobic009G113100 Sobic003G161800--Sobic009G113100 Sobic001G115500 Sobic001G115500 Sobic003G161800--Sobic001G115500 Sobic001G033900--Sobic007G017200 Sobic001G033900--Sobic003G259600 Sobic001G033900--Sobic001G013300 Sobic003G361400 Sobic003G361400 Sobic001G033900--Sobic003G361400 Sobic010G136250 Sobic010G136250 Sobic001G033900--Sobic010G136250 Sobic001G033900--Sobic006G140400 Sobic003G360300 Sobic003G360300 Sobic001G033900--Sobic003G360300 Sobic001G033900--Sobic005G108000 Sobic001G334100 Sobic001G334100 Sobic001G033900--Sobic001G334100 Sobic001G477700 Sobic001G477700 Sobic001G034500--Sobic001G477700 Sobic003G284000 Sobic003G284000 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G413800 Sobic001G413800 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic007G042900 Sobic007G042900 Sobic001G034500--Sobic007G042900 Sobic006G193500 Sobic006G193500 Sobic002G155100--Sobic006G193500 Sobic002G126800 Sobic002G126800 Sobic002G155100--Sobic002G126800 Sobic003G432300 Sobic003G432300 Sobic002G155100--Sobic003G432300 Sobic006G237000 Sobic006G237000 Sobic002G155100--Sobic006G237000 Sobic003G102700 Sobic003G102700 Sobic002G155100--Sobic003G102700 Sobic005G028100 Sobic005G028100 Sobic002G155100--Sobic005G028100 Sobic002G155100--Sobic001G373000 Sobic001G199500 Sobic001G199500 Sobic002G155100--Sobic001G199500 Sobic002G155100--Sobic001G013300
Octagon: transcription factors


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