Gene annotation
Transcriptome id Sobic.005G020000.7,Sobic.005G020000.1
Synonym Sb05g001710
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Y3P0
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF581
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14820 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g14450.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a033366
Brachypodium -
Barley HORVU3Hr1G019900.10 , HORVU3Hr1G019900.11 , HORVU3Hr1G019900.12 , HORVU3Hr1G019900.13 , HORVU3Hr1G019900.9 , HORVU3Hr1G019900.6 , HORVU3Hr1G019900.7 , HORVU3Hr1G019900.4 , HORVU3Hr1G019900.5 , HORVU3Hr1G019900.3 , HORVU3Hr1G019900.8
Wheat TraesCS3D02G111500 , TraesCS3A02G109700 , TraesCS3B02G128900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G105101 - -
2 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
3 Sobic.006G223400 - -
4 Sobic.008G147200 tubulin, putative, expressed -
5 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
6 Sobic.005G108000 - -
7 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.002G422100 EMB1011, putative, expressed K14317: NUP214, nuclear pore complex protein Nup214
9 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
10 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
11 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
12 Sobic.010G255800 expressed protein -
13 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
14 Sobic.002G127200 CRAL/TRIO domain containing protein, expressed -
15 Sobic.003G189333 - -
16 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
17 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
18 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
20 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4


Gene co-expression network
sample Sobic005G020000 Sobic005G020000 Sobic002G105101 Sobic002G105101 Sobic005G020000--Sobic002G105101 Sobic001G346900 Sobic001G346900 Sobic005G020000--Sobic001G346900 Sobic006G223400 Sobic006G223400 Sobic005G020000--Sobic006G223400 Sobic008G147200 Sobic008G147200 Sobic005G020000--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic005G020000--Sobic005G137700 Sobic005G108000 Sobic005G108000 Sobic005G020000--Sobic005G108000 Sobic010G032300 Sobic010G032300 Sobic005G020000--Sobic010G032300 Sobic002G422100 Sobic002G422100 Sobic005G020000--Sobic002G422100 Sobic003G409200 Sobic003G409200 Sobic005G020000--Sobic003G409200 Sobic007G217100 Sobic007G217100 Sobic002G105101--Sobic007G217100 Sobic001G052400 Sobic001G052400 Sobic002G105101--Sobic001G052400 Sobic002G105101--Sobic008G147200 Sobic009G211200 Sobic009G211200 Sobic002G105101--Sobic009G211200 Sobic010G224700 Sobic010G224700 Sobic002G105101--Sobic010G224700 Sobic010G215900 Sobic010G215900 Sobic002G105101--Sobic010G215900 Sobic004G321700 Sobic004G321700 Sobic002G105101--Sobic004G321700 Sobic009G145101 Sobic009G145101 Sobic002G105101--Sobic009G145101 Sobic002G105101--Sobic003G409200 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic001G346900--Sobic002G422100 Sobic006G223400--Sobic005G020000 Sobic010G015700 Sobic010G015700 Sobic006G223400--Sobic010G015700 Sobic006G223400--Sobic002G105101 Sobic006G223400--Sobic008G147200 Sobic001G013300 Sobic001G013300 Sobic006G223400--Sobic001G013300 Sobic001G334100 Sobic001G334100 Sobic006G223400--Sobic001G334100 Sobic005G000300 Sobic005G000300 Sobic006G223400--Sobic005G000300 Sobic003G184400 Sobic003G184400 Sobic006G223400--Sobic003G184400 Sobic003G376500 Sobic003G376500 Sobic006G223400--Sobic003G376500 Sobic008G147200--Sobic004G321700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic005G137700--Sobic008G147200 Sobic005G137700--Sobic010G007100 Sobic005G137700--Sobic003G042400 Sobic006G226300 Sobic006G226300 Sobic005G137700--Sobic006G226300 Sobic009G143800 Sobic009G143800 Sobic005G137700--Sobic009G143800 Sobic008G014500 Sobic008G014500 Sobic005G137700--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic005G137700--Sobic010G118000 Sobic007G220300 Sobic007G220300 Sobic005G137700--Sobic007G220300 Sobic008G131000 Sobic008G131000 Sobic005G137700--Sobic008G131000 Sobic005G108000--Sobic001G346900 Sobic002G127200 Sobic002G127200 Sobic005G108000--Sobic002G127200 Sobic004G224600 Sobic004G224600 Sobic005G108000--Sobic004G224600 Sobic006G178100 Sobic006G178100 Sobic005G108000--Sobic006G178100 Sobic002G171300 Sobic002G171300 Sobic005G108000--Sobic002G171300 Sobic005G108000--Sobic009G211200 Sobic010G080550 Sobic010G080550 Sobic005G108000--Sobic010G080550 Sobic006G002800 Sobic006G002800 Sobic005G108000--Sobic006G002800 Sobic006G245900 Sobic006G245900 Sobic005G108000--Sobic006G245900 Sobic004G342300 Sobic004G342300 Sobic010G032300--Sobic004G342300 Sobic006G140400 Sobic006G140400 Sobic010G032300--Sobic006G140400 Sobic006G274100 Sobic006G274100 Sobic010G032300--Sobic006G274100 Sobic010G032300--Sobic010G224700 Sobic006G059500 Sobic006G059500 Sobic010G032300--Sobic006G059500 Sobic002G132600 Sobic002G132600 Sobic010G032300--Sobic002G132600 Sobic010G032300--Sobic009G211200 Sobic003G259600 Sobic003G259600 Sobic010G032300--Sobic003G259600 Sobic005G028300 Sobic005G028300 Sobic010G032300--Sobic005G028300 Sobic009G119000 Sobic009G119000 Sobic002G422100--Sobic009G119000 Sobic003G212900 Sobic003G212900 Sobic002G422100--Sobic003G212900 Sobic002G422100--Sobic003G416700 Sobic002G422100--Sobic001G134300 Sobic002G422100--Sobic001G346900 Sobic010G001100 Sobic010G001100 Sobic002G422100--Sobic010G001100 Sobic001G091400 Sobic001G091400 Sobic002G422100--Sobic001G091400 Sobic002G154000 Sobic002G154000 Sobic002G422100--Sobic002G154000 Sobic001G063700 Sobic001G063700 Sobic002G422100--Sobic001G063700 Sobic003G409200--Sobic001G346900 Sobic003G409200--Sobic010G215900 Sobic004G111000 Sobic004G111000 Sobic003G409200--Sobic004G111000 Sobic008G057000 Sobic008G057000 Sobic003G409200--Sobic008G057000 Sobic003G427100 Sobic003G427100 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic003G409200--Sobic004G285000 Sobic010G279900 Sobic010G279900 Sobic003G409200--Sobic010G279900 Sobic003G409200--Sobic002G145800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.