Gene annotation
Transcriptome id Sobic.001G098100.1
Synonym 1, Sb01g008760, CYCH
Functional annotation cyclin, putative, expressed
UniProt A0A1B6QI68
Pfam PF00134 PF16899
Panther DB PTHR10026
NCBI CDD KOG2496; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit
KEGG Orthology K06634; cyclin H
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT5G27620 : cyclin H;1
RAP-DB (Rice) LOC_Os03g52750.2 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a008054
Brachypodium KQK13326 , KQK13327 , PNT74180 , PNT74181
Barley HORVU4Hr1G011340.25 , HORVU4Hr1G011340.22 , HORVU4Hr1G011340.23 , HORVU4Hr1G011340.20 , HORVU4Hr1G011340.21 , HORVU4Hr1G011340.3 , HORVU4Hr1G011340.7 , HORVU4Hr1G011340.6 , HORVU4Hr1G011340.9 , HORVU4Hr1G011340.8 , HORVU4Hr1G011340.1 , HORVU4Hr1G011340.2 , HORVU4Hr1G011340.5 , HORVU4Hr1G011340.4 , HORVU4Hr1G011340.13 , HORVU4Hr1G011340.12 , HORVU4Hr1G011340.11 , HORVU4Hr1G011340.10 , HORVU4Hr1G011340.17 , HORVU4Hr1G011340.16 , HORVU4Hr1G011340.15 , HORVU4Hr1G011340.14 , HORVU4Hr1G011340.19 , HORVU4Hr1G011340.18 , HORVU4Hr1G011340.24
Wheat TraesCS4A02G247000 , TraesCS4D02G066900 , TraesCS4D02G066900 , TraesCS4B02G067900
Populus -


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cDNA sequences
Sobic.001G098100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G138600 DIE2/ALG10 family, putative, expressed K03850: alpha-1,2-glucosyltransferase
2 Sobic.005G056500 integrator complex subunit 3, putative, expressed K13140: integrator complex subunit 3
3 Sobic.001G176700 CBS domain containing protein, expressed -
4 Sobic.006G027200 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.010G038600 expressed protein -
6 Sobic.007G118400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
7 Sobic.005G040500 OsFBX399 - F-box domain containing protein, expressed -
8 Sobic.003G223300 chitinase domain-containing protein 1 precursor, putative, expressed K17525: chitinase domain-containing protein 1
9 Sobic.010G125700 HEAT repeat family protein, putative, expressed K06699: proteasome activator subunit 4
10 Sobic.003G151200 WD domain, G-beta repeat domain containing protein, expressed K13111: WD40 repeat-containing protein SMU1
11 Sobic.009G184800 ribosomal protein L11 methyltransferase-related, putative, expressed -
12 Sobic.005G008500 expressed protein -
13 Sobic.004G208301 - K15429: TRM5, tRNA (guanine37-N1)-methyltransferase
14 Sobic.001G528350 - -
15 Sobic.001G038800 SCAR-like protein 1, putative, expressed -
16 Sobic.008G038400 expressed protein -
17 Sobic.009G038600 GA20663-PA, putative, expressed -
18 Sobic.004G319400 - K10901: BLM, RECQL3, bloom syndrome protein
19 Sobic.010G263500 expressed protein -
20 Sobic.001G408500 alpha-taxilin, putative, expressed -


Gene co-expression network
sample Sobic001G098100 Sobic001G098100 Sobic006G138600 Sobic006G138600 Sobic001G098100--Sobic006G138600 Sobic005G056500 Sobic005G056500 Sobic001G098100--Sobic005G056500 Sobic001G176700 Sobic001G176700 Sobic001G098100--Sobic001G176700 Sobic006G027200 Sobic006G027200 Sobic001G098100--Sobic006G027200 Sobic010G038600 Sobic010G038600 Sobic001G098100--Sobic010G038600 Sobic007G118400 Sobic007G118400 Sobic001G098100--Sobic007G118400 Sobic005G040500 Sobic005G040500 Sobic001G098100--Sobic005G040500 Sobic003G223300 Sobic003G223300 Sobic001G098100--Sobic003G223300 Sobic010G125700 Sobic010G125700 Sobic001G098100--Sobic010G125700 Sobic006G138600--Sobic001G098100 Sobic006G138600--Sobic010G125700 Sobic005G008500 Sobic005G008500 Sobic006G138600--Sobic005G008500 Sobic006G138600--Sobic006G027200 Sobic009G038600 Sobic009G038600 Sobic006G138600--Sobic009G038600 Sobic001G408500 Sobic001G408500 Sobic006G138600--Sobic001G408500 Sobic010G051200 Sobic010G051200 Sobic006G138600--Sobic010G051200 Sobic006G223200 Sobic006G223200 Sobic006G138600--Sobic006G223200 Sobic006G138600--Sobic007G118400 Sobic005G056500--Sobic001G098100 Sobic005G056500--Sobic010G038600 Sobic005G056500--Sobic005G040500 Sobic008G038400 Sobic008G038400 Sobic005G056500--Sobic008G038400 Sobic005G056500--Sobic003G223300 Sobic003G151200 Sobic003G151200 Sobic005G056500--Sobic003G151200 Sobic003G050700 Sobic003G050700 Sobic005G056500--Sobic003G050700 Sobic004G330000 Sobic004G330000 Sobic005G056500--Sobic004G330000 Sobic005G150600 Sobic005G150600 Sobic005G056500--Sobic005G150600 Sobic010G162200 Sobic010G162200 Sobic001G176700--Sobic010G162200 Sobic003G285600 Sobic003G285600 Sobic001G176700--Sobic003G285600 Sobic007G028200 Sobic007G028200 Sobic001G176700--Sobic007G028200 Sobic010G162500 Sobic010G162500 Sobic001G176700--Sobic010G162500 Sobic004G197700 Sobic004G197700 Sobic001G176700--Sobic004G197700 Sobic010G006300 Sobic010G006300 Sobic001G176700--Sobic010G006300 Sobic009G133800 Sobic009G133800 Sobic001G176700--Sobic009G133800 Sobic003G097701 Sobic003G097701 Sobic001G176700--Sobic003G097701 Sobic004G208301 Sobic004G208301 Sobic001G176700--Sobic004G208301 Sobic005G156450 Sobic005G156450 Sobic006G027200--Sobic005G156450 Sobic009G087480 Sobic009G087480 Sobic006G027200--Sobic009G087480 Sobic008G024900 Sobic008G024900 Sobic006G027200--Sobic008G024900 Sobic006G093550 Sobic006G093550 Sobic006G027200--Sobic006G093550 Sobic003G172450 Sobic003G172450 Sobic006G027200--Sobic003G172450 Sobic009G199800 Sobic009G199800 Sobic006G027200--Sobic009G199800 Sobic010G133225 Sobic010G133225 Sobic006G027200--Sobic010G133225 Sobic004G268600 Sobic004G268600 Sobic006G027200--Sobic004G268600 Sobic010G107901 Sobic010G107901 Sobic006G027200--Sobic010G107901 Sobic010G038600--Sobic005G056500 Sobic003G326500 Sobic003G326500 Sobic010G038600--Sobic003G326500 Sobic010G038600--Sobic003G050700 Sobic010G038600--Sobic003G223300 Sobic005G008600 Sobic005G008600 Sobic010G038600--Sobic005G008600 Sobic001G503200 Sobic001G503200 Sobic010G038600--Sobic001G503200 Sobic010G038600--Sobic001G098100 Sobic003G183466 Sobic003G183466 Sobic010G038600--Sobic003G183466 Sobic002G236500 Sobic002G236500 Sobic010G038600--Sobic002G236500 Sobic007G118400--Sobic004G208301 Sobic007G123700 Sobic007G123700 Sobic007G118400--Sobic007G123700 Sobic003G337200 Sobic003G337200 Sobic007G118400--Sobic003G337200 Sobic007G118400--Sobic003G172450 Sobic006G139200 Sobic006G139200 Sobic007G118400--Sobic006G139200 Sobic005G068300 Sobic005G068300 Sobic007G118400--Sobic005G068300 Sobic007G118400--Sobic010G107901 Sobic002G397700 Sobic002G397700 Sobic007G118400--Sobic002G397700 Sobic007G118400--Sobic004G268600 Sobic001G241300 Sobic001G241300 Sobic005G040500--Sobic001G241300 Sobic005G040500--Sobic003G151200 Sobic001G408600 Sobic001G408600 Sobic005G040500--Sobic001G408600 Sobic005G040500--Sobic003G050700 Sobic007G016900 Sobic007G016900 Sobic005G040500--Sobic007G016900 Sobic001G487100 Sobic001G487100 Sobic005G040500--Sobic001G487100 Sobic003G246000 Sobic003G246000 Sobic005G040500--Sobic003G246000 Sobic009G112300 Sobic009G112300 Sobic005G040500--Sobic009G112300 Sobic003G312700 Sobic003G312700 Sobic005G040500--Sobic003G312700 Sobic005G228600 Sobic005G228600 Sobic003G223300--Sobic005G228600 Sobic003G223300--Sobic010G038600 Sobic002G190400 Sobic002G190400 Sobic003G223300--Sobic002G190400 Sobic003G223300--Sobic005G056500 Sobic004G070100 Sobic004G070100 Sobic003G223300--Sobic004G070100 Sobic003G223300--Sobic003G050700 Sobic003G223300--Sobic005G156450 Sobic003G223300--Sobic001G098100 Sobic010G249900 Sobic010G249900 Sobic003G223300--Sobic010G249900 Sobic010G125700--Sobic006G138600 Sobic010G125700--Sobic001G176700 Sobic003G421600 Sobic003G421600 Sobic010G125700--Sobic003G421600 Sobic010G125700--Sobic004G208301 Sobic010G125700--Sobic006G027200 Sobic010G125700--Sobic010G162200 Sobic010G125700--Sobic007G118400 Sobic010G125700--Sobic004G268600 Sobic010G125700--Sobic007G123700
Octagon: transcription factors


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