Gene annotation
Transcriptome id Sobic.003G151200.2,Sobic.003G151200.1
Synonym SMU1, Sb03g013120
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6Q3B1 , A0A1B6Q3H2
Pfam PF00400
Panther DB PTHR22848
NCBI CDD -
KEGG Orthology K13111; WD40 repeat-containing protein SMU1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G73720 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os01g21940.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a024370
Brachypodium KQK04176
Barley HORVU0Hr1G006640.8 , HORVU0Hr1G006640.9 , HORVU0Hr1G006640.6 , HORVU0Hr1G006640.7 , HORVU0Hr1G006640.4 , HORVU0Hr1G006640.5 , HORVU0Hr1G006640.2 , HORVU0Hr1G006640.3 , HORVU0Hr1G006640.1 , HORVU0Hr1G006640.10 , HORVU0Hr1G006640.11
Wheat TraesCS3D02G200300 , TraesCS3B02G226600 , TraesCS3B02G226600 , TraesCS3A02G197200
Populus -


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cDNA sequences
Sobic.003G151200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G174700 expressed protein -
2 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
3 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
4 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
5 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
6 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
7 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
8 Sobic.003G296900 expressed protein -
9 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
10 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
11 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
12 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
13 Sobic.004G356200 expressed protein -
14 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
15 Sobic.007G145400 expressed protein -
16 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
17 Sobic.003G052800 RST1, putative, expressed -
18 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
19 Sobic.003G039000 GPI transamidase component Gpi16 subunit family protein, putative, expressed K05292: GPI-anchor transamidase subunit T
20 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2


Gene co-expression network
sample Sobic003G151200 Sobic003G151200 Sobic010G174700 Sobic010G174700 Sobic003G151200--Sobic010G174700 Sobic001G248100 Sobic001G248100 Sobic003G151200--Sobic001G248100 Sobic001G151100 Sobic001G151100 Sobic003G151200--Sobic001G151100 Sobic003G308500 Sobic003G308500 Sobic003G151200--Sobic003G308500 Sobic001G087600 Sobic001G087600 Sobic003G151200--Sobic001G087600 Sobic004G053500 Sobic004G053500 Sobic003G151200--Sobic004G053500 Sobic002G371600 Sobic002G371600 Sobic003G151200--Sobic002G371600 Sobic003G296900 Sobic003G296900 Sobic003G151200--Sobic003G296900 Sobic003G221400 Sobic003G221400 Sobic003G151200--Sobic003G221400 Sobic006G036100 Sobic006G036100 Sobic010G174700--Sobic006G036100 Sobic001G352900 Sobic001G352900 Sobic010G174700--Sobic001G352900 Sobic001G089600 Sobic001G089600 Sobic010G174700--Sobic001G089600 Sobic001G052400 Sobic001G052400 Sobic010G174700--Sobic001G052400 Sobic002G145800 Sobic002G145800 Sobic010G174700--Sobic002G145800 Sobic001G451300 Sobic001G451300 Sobic010G174700--Sobic001G451300 Sobic010G053600 Sobic010G053600 Sobic010G174700--Sobic010G053600 Sobic001G453400 Sobic001G453400 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic010G262100 Sobic010G262100 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic002G160700 Sobic002G160700 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic003G405500 Sobic003G405500 Sobic001G248100--Sobic003G405500 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G433800 Sobic001G433800 Sobic001G151100--Sobic001G433800 Sobic005G167700 Sobic005G167700 Sobic001G151100--Sobic005G167700 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic001G151100--Sobic005G162500 Sobic002G133300 Sobic002G133300 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic002G401500 Sobic002G401500 Sobic004G053500--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic004G053500--Sobic003G296900 Sobic004G053500--Sobic005G162500 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic002G371600--Sobic010G262100 Sobic003G043000 Sobic003G043000 Sobic003G296900--Sobic003G043000 Sobic001G065100 Sobic001G065100 Sobic003G296900--Sobic001G065100 Sobic003G296900--Sobic004G053500 Sobic003G296900--Sobic003G308500 Sobic004G265500 Sobic004G265500 Sobic003G296900--Sobic004G265500 Sobic003G241700 Sobic003G241700 Sobic003G296900--Sobic003G241700 Sobic001G255800 Sobic001G255800 Sobic003G296900--Sobic001G255800 Sobic003G296900--Sobic010G000800 Sobic004G131300 Sobic004G131300 Sobic003G296900--Sobic004G131300 Sobic007G054800 Sobic007G054800 Sobic003G221400--Sobic007G054800 Sobic003G221400--Sobic005G162500 Sobic001G493700 Sobic001G493700 Sobic003G221400--Sobic001G493700 Sobic001G110600 Sobic001G110600 Sobic003G221400--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic003G221400--Sobic001G004400 Sobic001G333100 Sobic001G333100 Sobic003G221400--Sobic001G333100 Sobic003G221400--Sobic002G179400 Sobic001G192000 Sobic001G192000 Sobic003G221400--Sobic001G192000 Sobic008G085300 Sobic008G085300 Sobic003G221400--Sobic008G085300
Octagon: transcription factors


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