Gene annotation
Transcriptome id Sobic.003G039000.1
Synonym Sb03g003490
Functional annotation GPI transamidase component Gpi16 subunit family protein, putative, expressed
UniProt A0A1B6Q160
Pfam PF04113
Panther DB PTHR12959 PTHR12959:SF11
NCBI CDD KOG2407; GPI transamidase complex, GPI16/PIG-T component, involved in glycosylphosphatidylinositol anchor biosynthesis
KEGG Orthology K05292; GPI-anchor transamidase subunit T
Gene Ontology GO:0016255; attachment of GPI anchor to protein


Orthologs (automatic annotation)
TAIR AT3G07140 : GPI transamidase component Gpi16 subunit family protein
RAP-DB (Rice) LOC_Os11g28980.1 : GPI transamidase component Gpi16 subunit family protein, putative, expressed
MaizeGDB (Corn) Zm00025a041411
Brachypodium KQJ88525
Barley HORVU6Hr1G086580.11 , HORVU6Hr1G086580.10 , HORVU4Hr1G022960.5 , HORVU4Hr1G022960.7 , HORVU4Hr1G022960.6 , HORVU4Hr1G022960.1 , HORVU4Hr1G022960.3 , HORVU4Hr1G022960.2 , HORVU6Hr1G086580.9 , HORVU6Hr1G086580.8 , HORVU6Hr1G086580.7 , HORVU6Hr1G086580.6 , HORVU6Hr1G086580.5 , HORVU6Hr1G086580.4 , HORVU6Hr1G086580.3 , HORVU6Hr1G086580.2 , HORVU6Hr1G086580.1
Wheat TraesCS4B02G121400 , TraesCS4A02G193700 , TraesCS6A02G364000 , TraesCS6D02G347600 , TraesCS4D02G119600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
2 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
3 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
4 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
5 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
6 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
7 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
8 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
9 Sobic.002G179400 DNA binding protein, putative, expressed -
10 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
11 Sobic.001G382600 expressed protein -
12 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
13 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
14 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
15 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
16 Sobic.008G124800 expressed protein -
17 Sobic.008G088872 - -
18 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
19 Sobic.004G135400 expressed protein -
20 Sobic.007G145400 expressed protein -


Gene co-expression network
sample Sobic003G039000 Sobic003G039000 Sobic001G255800 Sobic001G255800 Sobic003G039000--Sobic001G255800 Sobic001G065100 Sobic001G065100 Sobic003G039000--Sobic001G065100 Sobic004G131300 Sobic004G131300 Sobic003G039000--Sobic004G131300 Sobic003G146600 Sobic003G146600 Sobic003G039000--Sobic003G146600 Sobic003G375200 Sobic003G375200 Sobic003G039000--Sobic003G375200 Sobic004G223300 Sobic004G223300 Sobic003G039000--Sobic004G223300 Sobic010G080700 Sobic010G080700 Sobic003G039000--Sobic010G080700 Sobic005G062200 Sobic005G062200 Sobic003G039000--Sobic005G062200 Sobic002G179400 Sobic002G179400 Sobic003G039000--Sobic002G179400 Sobic001G255800--Sobic003G039000 Sobic001G255800--Sobic001G065100 Sobic004G053500 Sobic004G053500 Sobic001G255800--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic001G255800--Sobic002G401500 Sobic003G296900 Sobic003G296900 Sobic001G255800--Sobic003G296900 Sobic001G255800--Sobic005G062200 Sobic008G088872 Sobic008G088872 Sobic001G255800--Sobic008G088872 Sobic001G263600 Sobic001G263600 Sobic001G255800--Sobic001G263600 Sobic003G171400 Sobic003G171400 Sobic001G255800--Sobic003G171400 Sobic002G042600 Sobic002G042600 Sobic001G065100--Sobic002G042600 Sobic001G065100--Sobic002G179400 Sobic001G065100--Sobic001G263600 Sobic001G065100--Sobic002G401500 Sobic001G493700 Sobic001G493700 Sobic001G065100--Sobic001G493700 Sobic001G065100--Sobic008G088872 Sobic004G322400 Sobic004G322400 Sobic001G065100--Sobic004G322400 Sobic001G065100--Sobic005G062200 Sobic001G065100--Sobic003G296900 Sobic002G133300 Sobic002G133300 Sobic004G131300--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic009G084900 Sobic009G084900 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic010G059500 Sobic010G059500 Sobic004G131300--Sobic010G059500 Sobic007G054800 Sobic007G054800 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic002G256700 Sobic002G256700 Sobic004G131300--Sobic002G256700 Sobic003G308500 Sobic003G308500 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic002G235200 Sobic002G235200 Sobic003G146600--Sobic002G235200 Sobic001G145400 Sobic001G145400 Sobic003G146600--Sobic001G145400 Sobic002G150700 Sobic002G150700 Sobic003G146600--Sobic002G150700 Sobic003G146600--Sobic001G065100 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic003G375200--Sobic010G080700 Sobic003G375200--Sobic010G059500 Sobic003G375200--Sobic001G145400 Sobic003G375200--Sobic001G255800 Sobic003G375200--Sobic002G133300 Sobic003G375200--Sobic002G179400 Sobic003G375200--Sobic003G039000 Sobic001G450000 Sobic001G450000 Sobic003G375200--Sobic001G450000 Sobic008G091300 Sobic008G091300 Sobic003G375200--Sobic008G091300 Sobic004G147500 Sobic004G147500 Sobic004G223300--Sobic004G147500 Sobic002G340900 Sobic002G340900 Sobic004G223300--Sobic002G340900 Sobic004G223300--Sobic001G065100 Sobic004G223300--Sobic002G042600 Sobic008G124800 Sobic008G124800 Sobic004G223300--Sobic008G124800 Sobic004G223300--Sobic005G062200 Sobic004G223300--Sobic003G039000 Sobic001G382600 Sobic001G382600 Sobic004G223300--Sobic001G382600 Sobic004G223300--Sobic002G401500 Sobic010G080700--Sobic003G375200 Sobic003G221400 Sobic003G221400 Sobic010G080700--Sobic003G221400 Sobic005G162500 Sobic005G162500 Sobic010G080700--Sobic005G162500 Sobic010G080700--Sobic002G179400 Sobic010G080700--Sobic010G059500 Sobic001G089600 Sobic001G089600 Sobic010G080700--Sobic001G089600 Sobic010G080700--Sobic008G124800 Sobic010G080700--Sobic004G322400 Sobic010G080700--Sobic004G131300 Sobic005G062200--Sobic008G088872 Sobic005G062200--Sobic001G263600 Sobic005G062200--Sobic002G401500 Sobic006G184900 Sobic006G184900 Sobic005G062200--Sobic006G184900 Sobic005G062200--Sobic002G042600 Sobic003G209200 Sobic003G209200 Sobic005G062200--Sobic003G209200 Sobic003G114400 Sobic003G114400 Sobic005G062200--Sobic003G114400 Sobic005G062200--Sobic001G065100 Sobic002G335600 Sobic002G335600 Sobic005G062200--Sobic002G335600 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic002G179400--Sobic004G053500 Sobic002G429300 Sobic002G429300 Sobic002G179400--Sobic002G429300 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic002G179400--Sobic001G065100 Sobic002G179400--Sobic004G322400
Octagon: transcription factors


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