Gene annotation
Transcriptome id Sobic.004G319400.7,Sobic.004G319400.1,Sobic.004G319400.3,Sobic.004G319400.2,Sobic.004G319400.4,Sobic.004G319400.6,Sobic.004G319400.5
Synonym Sb04g035010, RecQl3, ATRECQ3
Functional annotation -
UniProt A0A194YSK1 , A0A1Z5RQ07 , A0A1Z5RPY1 , A0A1Z5RPY0 , A0A194YTP4
Pfam PF00271 PF00270 PF16124 PF00271 PF00270
Panther DB PTHR13710 PTHR13710:SF81
NCBI CDD KOG0327; Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases KOG0328Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily KOG0335ATP-dependent RNA helicase
KEGG Orthology K10901; BLM, RECQL3, bloom syndrome protein
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G35740 : DEAD/DEAH box RNA helicase family protein
RAP-DB (Rice) LOC_Os02g54020.1,LOC_Os11g48090.5 : helicase conserved C-terminal domain containing protein, expressed,DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a022354
Brachypodium KQK01618 , KQK01617
Barley -
Wheat TraesCS6D02G320500 , TraesCS6D02G320500 , TraesCS6A02G339900 , TraesCS6B02G371000 , TraesCS6B02G371000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G126500 - -
2 Sobic.007G002600 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
3 Sobic.006G138600 DIE2/ALG10 family, putative, expressed K03850: alpha-1,2-glucosyltransferase
4 Sobic.010G162200 serine/threonine-protein kinase 19, putative, expressed K08880: serine/threonine kinase 19
5 Sobic.006G279200 expressed protein K11789: DCAF1, DDB1- and CUL4-associated factor 1
6 Sobic.004G017000 leucine rich repeat protein, putative, expressed -
7 Sobic.010G125700 HEAT repeat family protein, putative, expressed K06699: proteasome activator subunit 4
8 Sobic.001G098100 cyclin, putative, expressed K06634: cyclin H
9 Sobic.001G193800 - -
10 Sobic.008G127100 CTP synthase, putative, expressed K01937: pyrG, CTP synthase
11 Sobic.001G176700 CBS domain containing protein, expressed -
12 Sobic.002G379750 - -
13 Sobic.005G150350 - -
14 Sobic.008G055300 UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed K07441: beta-1,4-N-acetylglucosaminyltransferase
15 Sobic.009G184800 ribosomal protein L11 methyltransferase-related, putative, expressed -
16 Sobic.006G205000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
17 Sobic.006G223200 expressed protein K19025: AP5Z1, AP-5 complex subunit zeta-1
18 Sobic.006G222600 AT hook motif family protein, expressed -
19 Sobic.009G133800 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed -
20 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase


Gene co-expression network
sample Sobic004G319400 Sobic004G319400 Sobic001G126500 Sobic001G126500 Sobic004G319400--Sobic001G126500 Sobic007G002600 Sobic007G002600 Sobic004G319400--Sobic007G002600 Sobic006G138600 Sobic006G138600 Sobic004G319400--Sobic006G138600 Sobic010G162200 Sobic010G162200 Sobic004G319400--Sobic010G162200 Sobic006G279200 Sobic006G279200 Sobic004G319400--Sobic006G279200 Sobic004G017000 Sobic004G017000 Sobic004G319400--Sobic004G017000 Sobic010G125700 Sobic010G125700 Sobic004G319400--Sobic010G125700 Sobic001G098100 Sobic001G098100 Sobic004G319400--Sobic001G098100 Sobic001G193800 Sobic001G193800 Sobic004G319400--Sobic001G193800 Sobic008G094150 Sobic008G094150 Sobic001G126500--Sobic008G094150 Sobic001G028200 Sobic001G028200 Sobic001G126500--Sobic001G028200 Sobic001G126500--Sobic001G193800 Sobic004G208301 Sobic004G208301 Sobic001G126500--Sobic004G208301 Sobic001G176700 Sobic001G176700 Sobic001G126500--Sobic001G176700 Sobic001G126500--Sobic010G162200 Sobic001G126500--Sobic004G319400 Sobic006G205000 Sobic006G205000 Sobic001G126500--Sobic006G205000 Sobic005G214150 Sobic005G214150 Sobic001G126500--Sobic005G214150 Sobic003G372500 Sobic003G372500 Sobic007G002600--Sobic003G372500 Sobic003G313500 Sobic003G313500 Sobic007G002600--Sobic003G313500 Sobic003G221900 Sobic003G221900 Sobic007G002600--Sobic003G221900 Sobic006G086500 Sobic006G086500 Sobic007G002600--Sobic006G086500 Sobic007G193700 Sobic007G193700 Sobic007G002600--Sobic007G193700 Sobic004G238900 Sobic004G238900 Sobic007G002600--Sobic004G238900 Sobic001G481900 Sobic001G481900 Sobic007G002600--Sobic001G481900 Sobic003G247300 Sobic003G247300 Sobic007G002600--Sobic003G247300 Sobic002G346200 Sobic002G346200 Sobic007G002600--Sobic002G346200 Sobic006G138600--Sobic001G098100 Sobic006G138600--Sobic010G125700 Sobic005G008500 Sobic005G008500 Sobic006G138600--Sobic005G008500 Sobic006G027200 Sobic006G027200 Sobic006G138600--Sobic006G027200 Sobic009G038600 Sobic009G038600 Sobic006G138600--Sobic009G038600 Sobic001G408500 Sobic001G408500 Sobic006G138600--Sobic001G408500 Sobic010G051200 Sobic010G051200 Sobic006G138600--Sobic010G051200 Sobic006G223200 Sobic006G223200 Sobic006G138600--Sobic006G223200 Sobic007G118400 Sobic007G118400 Sobic006G138600--Sobic007G118400 Sobic010G162200--Sobic001G176700 Sobic003G285600 Sobic003G285600 Sobic010G162200--Sobic003G285600 Sobic003G097701 Sobic003G097701 Sobic010G162200--Sobic003G097701 Sobic007G004750 Sobic007G004750 Sobic010G162200--Sobic007G004750 Sobic007G092000 Sobic007G092000 Sobic010G162200--Sobic007G092000 Sobic003G288500 Sobic003G288500 Sobic010G162200--Sobic003G288500 Sobic010G162500 Sobic010G162500 Sobic010G162200--Sobic010G162500 Sobic008G157700 Sobic008G157700 Sobic010G162200--Sobic008G157700 Sobic004G197700 Sobic004G197700 Sobic010G162200--Sobic004G197700 Sobic005G028600 Sobic005G028600 Sobic006G279200--Sobic005G028600 Sobic001G037100 Sobic001G037100 Sobic006G279200--Sobic001G037100 Sobic003G229500 Sobic003G229500 Sobic006G279200--Sobic003G229500 Sobic002G430000 Sobic002G430000 Sobic006G279200--Sobic002G430000 Sobic001G117200 Sobic001G117200 Sobic006G279200--Sobic001G117200 Sobic006G279200--Sobic003G247300 Sobic003G246100 Sobic003G246100 Sobic006G279200--Sobic003G246100 Sobic001G050200 Sobic001G050200 Sobic006G279200--Sobic001G050200 Sobic001G058700 Sobic001G058700 Sobic006G279200--Sobic001G058700 Sobic010G212100 Sobic010G212100 Sobic004G017000--Sobic010G212100 Sobic002G321300 Sobic002G321300 Sobic004G017000--Sobic002G321300 Sobic004G276200 Sobic004G276200 Sobic004G017000--Sobic004G276200 Sobic004G332100 Sobic004G332100 Sobic004G017000--Sobic004G332100 Sobic008G171000 Sobic008G171000 Sobic004G017000--Sobic008G171000 Sobic002G229600 Sobic002G229600 Sobic004G017000--Sobic002G229600 Sobic001G160800 Sobic001G160800 Sobic004G017000--Sobic001G160800 Sobic004G073400 Sobic004G073400 Sobic004G017000--Sobic004G073400 Sobic003G397500 Sobic003G397500 Sobic004G017000--Sobic003G397500 Sobic010G125700--Sobic006G138600 Sobic010G125700--Sobic001G176700 Sobic003G421600 Sobic003G421600 Sobic010G125700--Sobic003G421600 Sobic010G125700--Sobic004G208301 Sobic010G125700--Sobic006G027200 Sobic010G125700--Sobic010G162200 Sobic010G125700--Sobic007G118400 Sobic004G268600 Sobic004G268600 Sobic010G125700--Sobic004G268600 Sobic007G123700 Sobic007G123700 Sobic010G125700--Sobic007G123700 Sobic001G098100--Sobic006G138600 Sobic005G056500 Sobic005G056500 Sobic001G098100--Sobic005G056500 Sobic001G098100--Sobic001G176700 Sobic001G098100--Sobic006G027200 Sobic010G038600 Sobic010G038600 Sobic001G098100--Sobic010G038600 Sobic001G098100--Sobic007G118400 Sobic005G040500 Sobic005G040500 Sobic001G098100--Sobic005G040500 Sobic003G223300 Sobic003G223300 Sobic001G098100--Sobic003G223300 Sobic001G098100--Sobic010G125700 Sobic001G193800--Sobic001G176700 Sobic001G193800--Sobic003G285600 Sobic001G193800--Sobic010G162200 Sobic006G122500 Sobic006G122500 Sobic001G193800--Sobic006G122500 Sobic010G019200 Sobic010G019200 Sobic001G193800--Sobic010G019200 Sobic001G193800--Sobic001G126500 Sobic001G505800 Sobic001G505800 Sobic001G193800--Sobic001G505800 Sobic006G049200 Sobic006G049200 Sobic001G193800--Sobic006G049200 Sobic003G339300 Sobic003G339300 Sobic001G193800--Sobic003G339300
Octagon: transcription factors


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