Gene annotation
Transcriptome id Sobic.004G017000.2
Synonym Sb04g001610
Functional annotation leucine rich repeat protein, putative, expressed
UniProt A0A1Z5RKH2
Pfam PF00560 PF13855
Panther DB PTHR27004 PTHR27004:SF14
NCBI CDD KOG0472; Leucine-rich repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G34930 : disease resistance family protein / LRR family protein
RAP-DB (Rice) LOC_Os07g28300.1 : leucine rich repeat protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@synthase, putative, expressed K02377: TSTA3, GDP-L-fucose synthase
2 Sobic.002G321300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
3 Sobic.004G276200 peptide transporter PTR2, putative, expressed -
4 Sobic.004G332100 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.008G171000 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
6 Sobic.002G229600 - -
7 Sobic.001G160800 integral membrane protein DUF6 containing protein, expressed -
8 Sobic.004G073400 multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
9 Sobic.003G397500 expressed protein -
10 Sobic.010G233450 - -
11 Sobic.008G014200 cytochrome P450, putative, expressed -
12 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.010G085400 down-regulated TF in developmental senescence(PubMedID : 27586543)@OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
14 Sobic.001G470900 sulfate transporter, putative, expressed K17469: sulfate transporter 2, low-affinity
15 Sobic.003G298600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
16 Sobic.001G391300 "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
17 Sobic.002G086800 expressed protein -
18 Sobic.009G183101 - -
19 Sobic.001G086500 down-regulated TF in developmental senescence(PubMedID : 27586543)@OsMADS14 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
20 Sobic.008G031300 nucleotidyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G017000 Sobic004G017000 Sobic010G212100 Sobic010G212100 Sobic004G017000--Sobic010G212100 Sobic002G321300 Sobic002G321300 Sobic004G017000--Sobic002G321300 Sobic004G276200 Sobic004G276200 Sobic004G017000--Sobic004G276200 Sobic004G332100 Sobic004G332100 Sobic004G017000--Sobic004G332100 Sobic008G171000 Sobic008G171000 Sobic004G017000--Sobic008G171000 Sobic002G229600 Sobic002G229600 Sobic004G017000--Sobic002G229600 Sobic001G160800 Sobic001G160800 Sobic004G017000--Sobic001G160800 Sobic004G073400 Sobic004G073400 Sobic004G017000--Sobic004G073400 Sobic003G397500 Sobic003G397500 Sobic004G017000--Sobic003G397500 Sobic010G212100--Sobic004G276200 Sobic008G014200 Sobic008G014200 Sobic010G212100--Sobic008G014200 Sobic010G212100--Sobic004G073400 Sobic003G109832 Sobic003G109832 Sobic010G212100--Sobic003G109832 Sobic005G087800 Sobic005G087800 Sobic010G212100--Sobic005G087800 Sobic003G078501 Sobic003G078501 Sobic010G212100--Sobic003G078501 Sobic002G189000 Sobic002G189000 Sobic010G212100--Sobic002G189000 Sobic010G212100--Sobic004G017000 Sobic003G233900 Sobic003G233900 Sobic010G212100--Sobic003G233900 Sobic002G321300--Sobic001G160800 Sobic002G321300--Sobic004G276200 Sobic002G417300 Sobic002G417300 Sobic002G321300--Sobic002G417300 Sobic003G339700 Sobic003G339700 Sobic002G321300--Sobic003G339700 Sobic007G213100 Sobic007G213100 Sobic002G321300--Sobic007G213100 Sobic003G298600 Sobic003G298600 Sobic002G321300--Sobic003G298600 Sobic010G177800 Sobic010G177800 Sobic002G321300--Sobic010G177800 Sobic007G146400 Sobic007G146400 Sobic002G321300--Sobic007G146400 Sobic010G090301 Sobic010G090301 Sobic002G321300--Sobic010G090301 Sobic001G391300 Sobic001G391300 Sobic004G276200--Sobic001G391300 Sobic009G183101 Sobic009G183101 Sobic004G276200--Sobic009G183101 Sobic004G276200--Sobic008G014200 Sobic004G276200--Sobic003G339700 Sobic004G276200--Sobic010G212100 Sobic004G097300 Sobic004G097300 Sobic004G276200--Sobic004G097300 Sobic004G276200--Sobic010G090301 Sobic009G069300 Sobic009G069300 Sobic004G276200--Sobic009G069300 Sobic004G276200--Sobic002G321300 Sobic004G332100--Sobic001G391300 Sobic007G160200 Sobic007G160200 Sobic004G332100--Sobic007G160200 Sobic006G220300 Sobic006G220300 Sobic004G332100--Sobic006G220300 Sobic004G332100--Sobic003G339700 Sobic001G110900 Sobic001G110900 Sobic004G332100--Sobic001G110900 Sobic002G086800 Sobic002G086800 Sobic004G332100--Sobic002G086800 Sobic004G332100--Sobic009G069300 Sobic001G470900 Sobic001G470900 Sobic004G332100--Sobic001G470900 Sobic001G087700 Sobic001G087700 Sobic004G332100--Sobic001G087700 Sobic008G171000--Sobic004G276200 Sobic008G171000--Sobic002G086800 Sobic008G171000--Sobic001G391300 Sobic008G171000--Sobic006G220300 Sobic008G171000--Sobic002G321300 Sobic008G171000--Sobic007G213100 Sobic008G171000--Sobic004G332100 Sobic009G155700 Sobic009G155700 Sobic008G171000--Sobic009G155700 Sobic008G171000--Sobic003G298600 Sobic003G252400 Sobic003G252400 Sobic002G229600--Sobic003G252400 Sobic004G211301 Sobic004G211301 Sobic002G229600--Sobic004G211301 Sobic002G013900 Sobic002G013900 Sobic002G229600--Sobic002G013900 Sobic002G229600--Sobic003G397500 Sobic003G066900 Sobic003G066900 Sobic002G229600--Sobic003G066900 Sobic004G257350 Sobic004G257350 Sobic002G229600--Sobic004G257350 Sobic002G229600--Sobic003G233900 Sobic002G331450 Sobic002G331450 Sobic002G229600--Sobic002G331450 Sobic002G229600--Sobic002G189000 Sobic004G207400 Sobic004G207400 Sobic001G160800--Sobic004G207400 Sobic001G160800--Sobic003G339700 Sobic001G160800--Sobic002G417300 Sobic005G028800 Sobic005G028800 Sobic001G160800--Sobic005G028800 Sobic001G160800--Sobic007G146400 Sobic007G124500 Sobic007G124500 Sobic001G160800--Sobic007G124500 Sobic002G225100 Sobic002G225100 Sobic001G160800--Sobic002G225100 Sobic001G509200 Sobic001G509200 Sobic001G160800--Sobic001G509200 Sobic004G271600 Sobic004G271600 Sobic001G160800--Sobic004G271600 Sobic002G182800 Sobic002G182800 Sobic004G073400--Sobic002G182800 Sobic004G073400--Sobic010G212100 Sobic010G085400 Sobic010G085400 Sobic004G073400--Sobic010G085400 Sobic004G073400--Sobic003G233900 Sobic003G423300 Sobic003G423300 Sobic004G073400--Sobic003G423300 Sobic004G073400--Sobic004G257350 Sobic009G128300 Sobic009G128300 Sobic004G073400--Sobic009G128300 Sobic004G073400--Sobic002G229600 Sobic001G509400 Sobic001G509400 Sobic004G073400--Sobic001G509400 Sobic003G397500--Sobic003G252400 Sobic008G075600 Sobic008G075600 Sobic003G397500--Sobic008G075600 Sobic003G397500--Sobic004G211301 Sobic003G397500--Sobic002G331450 Sobic010G026500 Sobic010G026500 Sobic003G397500--Sobic010G026500 Sobic002G110200 Sobic002G110200 Sobic003G397500--Sobic002G110200 Sobic003G397500--Sobic002G229600 Sobic008G031300 Sobic008G031300 Sobic003G397500--Sobic008G031300 Sobic003G397500--Sobic010G085400
Octagon: transcription factors


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