Gene annotation
Transcriptome id Sobic.008G171000.1
Synonym Sb08g021580, E37, IEP37, VTE3, APG1
Functional annotation methyltransferase domain containing protein, putative, expressed
UniProt A0A1B6PEA9
Pfam PF08241
Panther DB PTHR10108 PTHR10108:SF904
NCBI CDD KOG1540; Ubiquinone biosynthesis methyltransferase COQ5
KEGG Orthology K12502; VTE3, MPBQ/MSBQ methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G63410 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os12g42090.2 : methyltransferase domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004703
Brachypodium KQJ93489 , KQJ85779
Barley HORVU6Hr1G060690.12 , HORVU3Hr1G113670.1 , HORVU3Hr1G113670.3 , HORVU3Hr1G113670.2 , HORVU3Hr1G113670.4 , HORVU5Hr1G008980.15 , HORVU5Hr1G008980.17 , HORVU5Hr1G008980.21 , HORVU5Hr1G008980.6 , HORVU5Hr1G008980.7 , HORVU5Hr1G008980.4 , HORVU5Hr1G008980.5 , HORVU5Hr1G008980.2 , HORVU5Hr1G008980.3 , HORVU5Hr1G008980.8 , HORVU6Hr1G060690.3 , HORVU6Hr1G060690.2 , HORVU6Hr1G060690.7 , HORVU6Hr1G060690.6 , HORVU6Hr1G060690.4 , HORVU6Hr1G060690.9
Wheat TraesCS6B02G265600 , TraesCS5A02G035100 , TraesCS4A02G301600 , TraesCS4A02G301600 , TraesCS6D02G219700 , TraesCS6A02G237100 , TraesCS5B02G035200 , TraesCS5D02G043300
Populus -


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cDNA sequences
Sobic.008G171000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G276200 peptide transporter PTR2, putative, expressed -
2 Sobic.002G086800 expressed protein -
3 Sobic.001G391300 "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
4 Sobic.006G220300 - -
5 Sobic.002G321300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
6 Sobic.007G213100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@citrate transporter, putative, expressed K14445: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
7 Sobic.004G332100 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.009G155700 - -
9 Sobic.003G298600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
10 Sobic.003G066900 expressed protein -
11 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
12 Sobic.004G017000 leucine rich repeat protein, putative, expressed -
13 Sobic.001G110900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.001G087700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
15 Sobic.010G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@synthase, putative, expressed K02377: TSTA3, GDP-L-fucose synthase
16 Sobic.002G229600 - -
17 Sobic.010G092600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
18 Sobic.001G160800 integral membrane protein DUF6 containing protein, expressed -
19 Sobic.001G523200 CBL-interacting protein kinase 9(PubMedID : 26465154)@CBL-interacting protein kinase 9(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
20 Sobic.009G195800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit


Gene co-expression network
sample Sobic008G171000 Sobic008G171000 Sobic004G276200 Sobic004G276200 Sobic008G171000--Sobic004G276200 Sobic002G086800 Sobic002G086800 Sobic008G171000--Sobic002G086800 Sobic001G391300 Sobic001G391300 Sobic008G171000--Sobic001G391300 Sobic006G220300 Sobic006G220300 Sobic008G171000--Sobic006G220300 Sobic002G321300 Sobic002G321300 Sobic008G171000--Sobic002G321300 Sobic007G213100 Sobic007G213100 Sobic008G171000--Sobic007G213100 Sobic004G332100 Sobic004G332100 Sobic008G171000--Sobic004G332100 Sobic009G155700 Sobic009G155700 Sobic008G171000--Sobic009G155700 Sobic003G298600 Sobic003G298600 Sobic008G171000--Sobic003G298600 Sobic004G276200--Sobic001G391300 Sobic009G183101 Sobic009G183101 Sobic004G276200--Sobic009G183101 Sobic008G014200 Sobic008G014200 Sobic004G276200--Sobic008G014200 Sobic003G339700 Sobic003G339700 Sobic004G276200--Sobic003G339700 Sobic010G212100 Sobic010G212100 Sobic004G276200--Sobic010G212100 Sobic004G097300 Sobic004G097300 Sobic004G276200--Sobic004G097300 Sobic010G090301 Sobic010G090301 Sobic004G276200--Sobic010G090301 Sobic009G069300 Sobic009G069300 Sobic004G276200--Sobic009G069300 Sobic004G276200--Sobic002G321300 Sobic001G470900 Sobic001G470900 Sobic002G086800--Sobic001G470900 Sobic002G086800--Sobic001G391300 Sobic001G087700 Sobic001G087700 Sobic002G086800--Sobic001G087700 Sobic002G086800--Sobic004G332100 Sobic003G395900 Sobic003G395900 Sobic002G086800--Sobic003G395900 Sobic002G086800--Sobic006G220300 Sobic002G086800--Sobic008G171000 Sobic003G389700 Sobic003G389700 Sobic002G086800--Sobic003G389700 Sobic006G220200 Sobic006G220200 Sobic002G086800--Sobic006G220200 Sobic001G391300--Sobic004G097300 Sobic001G391300--Sobic004G276200 Sobic001G391300--Sobic002G086800 Sobic001G391300--Sobic006G220200 Sobic001G391300--Sobic004G332100 Sobic001G391300--Sobic003G339700 Sobic001G391300--Sobic001G087700 Sobic001G391300--Sobic001G470900 Sobic001G391300--Sobic009G183101 Sobic006G220300--Sobic006G220200 Sobic001G110900 Sobic001G110900 Sobic006G220300--Sobic001G110900 Sobic006G220300--Sobic009G155700 Sobic002G216400 Sobic002G216400 Sobic006G220300--Sobic002G216400 Sobic006G220300--Sobic001G087700 Sobic006G220300--Sobic004G332100 Sobic006G220300--Sobic001G470900 Sobic001G045600 Sobic001G045600 Sobic006G220300--Sobic001G045600 Sobic010G260300 Sobic010G260300 Sobic006G220300--Sobic010G260300 Sobic001G160800 Sobic001G160800 Sobic002G321300--Sobic001G160800 Sobic002G321300--Sobic004G276200 Sobic002G417300 Sobic002G417300 Sobic002G321300--Sobic002G417300 Sobic002G321300--Sobic003G339700 Sobic002G321300--Sobic007G213100 Sobic002G321300--Sobic003G298600 Sobic010G177800 Sobic010G177800 Sobic002G321300--Sobic010G177800 Sobic007G146400 Sobic007G146400 Sobic002G321300--Sobic007G146400 Sobic002G321300--Sobic010G090301 Sobic007G213100--Sobic002G321300 Sobic003G051000 Sobic003G051000 Sobic007G213100--Sobic003G051000 Sobic007G213100--Sobic007G146400 Sobic007G213100--Sobic003G339700 Sobic007G213100--Sobic001G160800 Sobic001G284475 Sobic001G284475 Sobic007G213100--Sobic001G284475 Sobic007G213100--Sobic009G069300 Sobic010G251300 Sobic010G251300 Sobic007G213100--Sobic010G251300 Sobic007G213100--Sobic008G171000 Sobic004G332100--Sobic001G391300 Sobic007G160200 Sobic007G160200 Sobic004G332100--Sobic007G160200 Sobic004G332100--Sobic006G220300 Sobic004G332100--Sobic003G339700 Sobic004G332100--Sobic001G110900 Sobic004G332100--Sobic002G086800 Sobic004G332100--Sobic009G069300 Sobic004G332100--Sobic001G470900 Sobic004G332100--Sobic001G087700 Sobic009G155700--Sobic006G220300 Sobic010G092600 Sobic010G092600 Sobic009G155700--Sobic010G092600 Sobic009G155700--Sobic006G220200 Sobic009G155700--Sobic001G087700 Sobic009G155700--Sobic001G391300 Sobic009G155700--Sobic001G045600 Sobic009G155700--Sobic001G110900 Sobic002G387200 Sobic002G387200 Sobic009G155700--Sobic002G387200 Sobic009G155700--Sobic008G171000 Sobic005G087900 Sobic005G087900 Sobic003G298600--Sobic005G087900 Sobic003G298600--Sobic003G339700 Sobic003G298600--Sobic007G146400 Sobic002G211800 Sobic002G211800 Sobic003G298600--Sobic002G211800 Sobic003G362600 Sobic003G362600 Sobic003G298600--Sobic003G362600 Sobic009G066900 Sobic009G066900 Sobic003G298600--Sobic009G066900 Sobic010G186700 Sobic010G186700 Sobic003G298600--Sobic010G186700 Sobic001G251200 Sobic001G251200 Sobic003G298600--Sobic001G251200 Sobic002G110300 Sobic002G110300 Sobic003G298600--Sobic002G110300
Octagon: transcription factors


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