Gene annotation
Transcriptome id Sobic.007G213100.2
Synonym TDT, ATTDT, ATSDAT, Sb07g028030
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
citrate transporter, putative, expressed
UniProt A0A1Z5RB04
Pfam PF03600
Panther DB PTHR10283 PTHR10283:SF101
NCBI CDD KOG1281; Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters
KEGG Orthology K14445; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G47560 : tonoplast dicarboxylate transporter
RAP-DB (Rice) LOC_Os09g31130.1 : citrate transporter, putative, expressed
MaizeGDB (Corn) Zm00025a047433 , Zm00025a028299
Brachypodium KQJ98893 , KQJ90730
Barley HORVU5Hr1G092230.3 , HORVU5Hr1G092230.2 , HORVU5Hr1G092230.1 , HORVU5Hr1G092230.5 , HORVU5Hr1G092230.4 , HORVU5Hr1G072780.11 , HORVU5Hr1G072780.10 , HORVU7Hr1G050030.3 , HORVU7Hr1G050030.2 , HORVU7Hr1G050030.5 , HORVU7Hr1G050030.4 , HORVU7Hr1G050030.7 , HORVU7Hr1G050030.9 , HORVU7Hr1G050030.14 , HORVU7Hr1G050030.11 , HORVU7Hr1G050030.13 , HORVU7Hr1G050030.12 , HORVU5Hr1G072780.5 , HORVU5Hr1G072780.4 , HORVU5Hr1G072780.7 , HORVU5Hr1G072780.6 , HORVU5Hr1G072780.1 , HORVU5Hr1G072780.3 , HORVU5Hr1G072780.2 , HORVU5Hr1G072780.9 , HORVU5Hr1G072780.8
Wheat TraesCS5B02G261800 , TraesCS7D02G243000 , TraesCS5A02G263100 , TraesCS5B02G262500 , TraesCS7A02G244400 , TraesCS5D02G270600 , TraesCS5B02G261500 , TraesCS3A02G183800 , TraesCSU02G096900 , TraesCS3D02G188000 , TraesCS3B02G213600
Populus -


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cDNA sequences
Sobic.007G213100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G321300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
2 Sobic.003G051000 expressed protein -
3 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
4 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.001G160800 integral membrane protein DUF6 containing protein, expressed -
6 Sobic.001G284475 - -
7 Sobic.009G069300 actin binding protein family(PubMedID : 26465154)@AR791, putative, expressed -
8 Sobic.010G251300 OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed K08869: ADCK, aarF domain-containing kinase
9 Sobic.008G171000 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
10 Sobic.001G057700 heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
11 Sobic.004G276200 peptide transporter PTR2, putative, expressed -
12 Sobic.007G062200 expressed protein -
13 Sobic.002G417300 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
14 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
15 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
16 Sobic.002G200700 expressed protein -
17 Sobic.006G038951 - -
18 Sobic.010G046700 ABC transporter, ATP-binding protein, putative, expressed -
19 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
20 Sobic.010G272200 leucine zipper protein-like, putative, expressed -


Gene co-expression network
sample Sobic007G213100 Sobic007G213100 Sobic002G321300 Sobic002G321300 Sobic007G213100--Sobic002G321300 Sobic003G051000 Sobic003G051000 Sobic007G213100--Sobic003G051000 Sobic007G146400 Sobic007G146400 Sobic007G213100--Sobic007G146400 Sobic003G339700 Sobic003G339700 Sobic007G213100--Sobic003G339700 Sobic001G160800 Sobic001G160800 Sobic007G213100--Sobic001G160800 Sobic001G284475 Sobic001G284475 Sobic007G213100--Sobic001G284475 Sobic009G069300 Sobic009G069300 Sobic007G213100--Sobic009G069300 Sobic010G251300 Sobic010G251300 Sobic007G213100--Sobic010G251300 Sobic008G171000 Sobic008G171000 Sobic007G213100--Sobic008G171000 Sobic002G321300--Sobic001G160800 Sobic004G276200 Sobic004G276200 Sobic002G321300--Sobic004G276200 Sobic002G417300 Sobic002G417300 Sobic002G321300--Sobic002G417300 Sobic002G321300--Sobic003G339700 Sobic002G321300--Sobic007G213100 Sobic003G298600 Sobic003G298600 Sobic002G321300--Sobic003G298600 Sobic010G177800 Sobic010G177800 Sobic002G321300--Sobic010G177800 Sobic002G321300--Sobic007G146400 Sobic010G090301 Sobic010G090301 Sobic002G321300--Sobic010G090301 Sobic007G164000 Sobic007G164000 Sobic003G051000--Sobic007G164000 Sobic001G057700 Sobic001G057700 Sobic003G051000--Sobic001G057700 Sobic004G169000 Sobic004G169000 Sobic003G051000--Sobic004G169000 Sobic005G084800 Sobic005G084800 Sobic003G051000--Sobic005G084800 Sobic010G236300 Sobic010G236300 Sobic003G051000--Sobic010G236300 Sobic001G498000 Sobic001G498000 Sobic003G051000--Sobic001G498000 Sobic003G043300 Sobic003G043300 Sobic003G051000--Sobic003G043300 Sobic002G187700 Sobic002G187700 Sobic003G051000--Sobic002G187700 Sobic003G355900 Sobic003G355900 Sobic003G051000--Sobic003G355900 Sobic007G146400--Sobic001G057700 Sobic005G132000 Sobic005G132000 Sobic007G146400--Sobic005G132000 Sobic006G257800 Sobic006G257800 Sobic007G146400--Sobic006G257800 Sobic002G383600 Sobic002G383600 Sobic007G146400--Sobic002G383600 Sobic006G051800 Sobic006G051800 Sobic007G146400--Sobic006G051800 Sobic009G074400 Sobic009G074400 Sobic007G146400--Sobic009G074400 Sobic004G231900 Sobic004G231900 Sobic007G146400--Sobic004G231900 Sobic007G146400--Sobic003G339700 Sobic007G146400--Sobic002G417300 Sobic003G339700--Sobic002G417300 Sobic003G381700 Sobic003G381700 Sobic003G339700--Sobic003G381700 Sobic008G187100 Sobic008G187100 Sobic003G339700--Sobic008G187100 Sobic003G339700--Sobic007G146400 Sobic003G339700--Sobic001G160800 Sobic003G334000 Sobic003G334000 Sobic003G339700--Sobic003G334000 Sobic003G339700--Sobic001G057700 Sobic003G339700--Sobic009G069300 Sobic006G066800 Sobic006G066800 Sobic003G339700--Sobic006G066800 Sobic004G207400 Sobic004G207400 Sobic001G160800--Sobic004G207400 Sobic001G160800--Sobic003G339700 Sobic001G160800--Sobic002G417300 Sobic005G028800 Sobic005G028800 Sobic001G160800--Sobic005G028800 Sobic001G160800--Sobic007G146400 Sobic007G124500 Sobic007G124500 Sobic001G160800--Sobic007G124500 Sobic002G225100 Sobic002G225100 Sobic001G160800--Sobic002G225100 Sobic001G509200 Sobic001G509200 Sobic001G160800--Sobic001G509200 Sobic004G271600 Sobic004G271600 Sobic001G160800--Sobic004G271600 Sobic006G056800 Sobic006G056800 Sobic001G284475--Sobic006G056800 Sobic006G038951 Sobic006G038951 Sobic001G284475--Sobic006G038951 Sobic003G251400 Sobic003G251400 Sobic001G284475--Sobic003G251400 Sobic003G181201 Sobic003G181201 Sobic001G284475--Sobic003G181201 Sobic003G252400 Sobic003G252400 Sobic001G284475--Sobic003G252400 Sobic010G217532 Sobic010G217532 Sobic001G284475--Sobic010G217532 Sobic005G060600 Sobic005G060600 Sobic001G284475--Sobic005G060600 Sobic001G284475--Sobic007G213100 Sobic003G164950 Sobic003G164950 Sobic001G284475--Sobic003G164950 Sobic009G183101 Sobic009G183101 Sobic009G069300--Sobic009G183101 Sobic001G426800 Sobic001G426800 Sobic009G069300--Sobic001G426800 Sobic009G069300--Sobic003G339700 Sobic009G069300--Sobic002G417300 Sobic009G069300--Sobic004G276200 Sobic003G425500 Sobic003G425500 Sobic009G069300--Sobic003G425500 Sobic004G332100 Sobic004G332100 Sobic009G069300--Sobic004G332100 Sobic002G368700 Sobic002G368700 Sobic009G069300--Sobic002G368700 Sobic006G150400 Sobic006G150400 Sobic009G069300--Sobic006G150400 Sobic002G290400 Sobic002G290400 Sobic010G251300--Sobic002G290400 Sobic009G200800 Sobic009G200800 Sobic010G251300--Sobic009G200800 Sobic010G251300--Sobic003G043300 Sobic001G064200 Sobic001G064200 Sobic010G251300--Sobic001G064200 Sobic010G251300--Sobic002G383600 Sobic003G350800 Sobic003G350800 Sobic010G251300--Sobic003G350800 Sobic010G251300--Sobic007G146400 Sobic001G333600 Sobic001G333600 Sobic010G251300--Sobic001G333600 Sobic010G251300--Sobic001G057700 Sobic008G171000--Sobic004G276200 Sobic002G086800 Sobic002G086800 Sobic008G171000--Sobic002G086800 Sobic001G391300 Sobic001G391300 Sobic008G171000--Sobic001G391300 Sobic006G220300 Sobic006G220300 Sobic008G171000--Sobic006G220300 Sobic008G171000--Sobic002G321300 Sobic008G171000--Sobic007G213100 Sobic008G171000--Sobic004G332100 Sobic009G155700 Sobic009G155700 Sobic008G171000--Sobic009G155700 Sobic008G171000--Sobic003G298600
Octagon: transcription factors


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