Gene annotation
Transcriptome id Sobic.010G212100.1
Synonym Sb10g025880, GER2
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
synthase, putative, expressed
UniProt C5Z755
Pfam PF16363
Panther DB PTHR10366 PTHR10366:SF456
NCBI CDD KOG1431; GDP-L-fucose synthetase
KEGG Orthology K02377; TSTA3, GDP-L-fucose synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17890 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os06g44260.1 : synthase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G276200 peptide transporter PTR2, putative, expressed -
2 Sobic.008G014200 cytochrome P450, putative, expressed -
3 Sobic.004G073400 multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
4 Sobic.003G109832 - -
5 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
6 Sobic.003G078501 - -
7 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
8 Sobic.004G017000 leucine rich repeat protein, putative, expressed -
9 Sobic.003G233900 - -
10 Sobic.009G195800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
11 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
12 Sobic.002G229600 - -
13 Sobic.004G155150 - -
14 Sobic.004G257350 - -
15 Sobic.001G391300 "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
16 Sobic.001G095750 - -
17 Sobic.002G137800 gibberellin 20 oxidase 2, putative, expressed -
18 Sobic.009G183101 - -
19 Sobic.003G066900 expressed protein -
20 Sobic.010G090301 - -


Gene co-expression network
sample Sobic010G212100 Sobic010G212100 Sobic004G276200 Sobic004G276200 Sobic010G212100--Sobic004G276200 Sobic008G014200 Sobic008G014200 Sobic010G212100--Sobic008G014200 Sobic004G073400 Sobic004G073400 Sobic010G212100--Sobic004G073400 Sobic003G109832 Sobic003G109832 Sobic010G212100--Sobic003G109832 Sobic005G087800 Sobic005G087800 Sobic010G212100--Sobic005G087800 Sobic003G078501 Sobic003G078501 Sobic010G212100--Sobic003G078501 Sobic002G189000 Sobic002G189000 Sobic010G212100--Sobic002G189000 Sobic004G017000 Sobic004G017000 Sobic010G212100--Sobic004G017000 Sobic003G233900 Sobic003G233900 Sobic010G212100--Sobic003G233900 Sobic001G391300 Sobic001G391300 Sobic004G276200--Sobic001G391300 Sobic009G183101 Sobic009G183101 Sobic004G276200--Sobic009G183101 Sobic004G276200--Sobic008G014200 Sobic003G339700 Sobic003G339700 Sobic004G276200--Sobic003G339700 Sobic004G276200--Sobic010G212100 Sobic004G097300 Sobic004G097300 Sobic004G276200--Sobic004G097300 Sobic010G090301 Sobic010G090301 Sobic004G276200--Sobic010G090301 Sobic009G069300 Sobic009G069300 Sobic004G276200--Sobic009G069300 Sobic002G321300 Sobic002G321300 Sobic004G276200--Sobic002G321300 Sobic008G014200--Sobic004G276200 Sobic008G014200--Sobic010G212100 Sobic008G014200--Sobic010G090301 Sobic008G014200--Sobic009G183101 Sobic008G014200--Sobic004G097300 Sobic008G014200--Sobic001G391300 Sobic007G051600 Sobic007G051600 Sobic008G014200--Sobic007G051600 Sobic002G322000 Sobic002G322000 Sobic008G014200--Sobic002G322000 Sobic008G014200--Sobic002G321300 Sobic002G182800 Sobic002G182800 Sobic004G073400--Sobic002G182800 Sobic004G073400--Sobic010G212100 Sobic010G085400 Sobic010G085400 Sobic004G073400--Sobic010G085400 Sobic004G073400--Sobic003G233900 Sobic003G423300 Sobic003G423300 Sobic004G073400--Sobic003G423300 Sobic004G257350 Sobic004G257350 Sobic004G073400--Sobic004G257350 Sobic009G128300 Sobic009G128300 Sobic004G073400--Sobic009G128300 Sobic002G229600 Sobic002G229600 Sobic004G073400--Sobic002G229600 Sobic001G509400 Sobic001G509400 Sobic004G073400--Sobic001G509400 Sobic010G273700 Sobic010G273700 Sobic003G109832--Sobic010G273700 Sobic001G314300 Sobic001G314300 Sobic003G109832--Sobic001G314300 Sobic009G227800 Sobic009G227800 Sobic003G109832--Sobic009G227800 Sobic001G095750 Sobic001G095750 Sobic003G109832--Sobic001G095750 Sobic004G006500 Sobic004G006500 Sobic003G109832--Sobic004G006500 Sobic003G370400 Sobic003G370400 Sobic003G109832--Sobic003G370400 Sobic003G423200 Sobic003G423200 Sobic003G109832--Sobic003G423200 Sobic002G137800 Sobic002G137800 Sobic003G109832--Sobic002G137800 Sobic002G185200 Sobic002G185200 Sobic003G109832--Sobic002G185200 Sobic005G087800--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic005G087800--Sobic004G285100 Sobic005G087800--Sobic002G182800 Sobic005G087800--Sobic002G189000 Sobic004G283300 Sobic004G283300 Sobic005G087800--Sobic004G283300 Sobic004G310600 Sobic004G310600 Sobic005G087800--Sobic004G310600 Sobic003G227600 Sobic003G227600 Sobic005G087800--Sobic003G227600 Sobic005G087800--Sobic009G128300 Sobic009G000700 Sobic009G000700 Sobic005G087800--Sobic009G000700 Sobic003G078501--Sobic004G310600 Sobic003G078501--Sobic009G000700 Sobic010G006700 Sobic010G006700 Sobic003G078501--Sobic010G006700 Sobic001G125100 Sobic001G125100 Sobic003G078501--Sobic001G125100 Sobic001G159850 Sobic001G159850 Sobic003G078501--Sobic001G159850 Sobic002G013900 Sobic002G013900 Sobic002G189000--Sobic002G013900 Sobic002G189000--Sobic003G233900 Sobic002G271100 Sobic002G271100 Sobic002G189000--Sobic002G271100 Sobic010G260300 Sobic010G260300 Sobic002G189000--Sobic010G260300 Sobic002G189000--Sobic009G128300 Sobic002G110200 Sobic002G110200 Sobic002G189000--Sobic002G110200 Sobic003G225900 Sobic003G225900 Sobic002G189000--Sobic003G225900 Sobic004G155150 Sobic004G155150 Sobic002G189000--Sobic004G155150 Sobic002G189000--Sobic004G285100 Sobic004G017000--Sobic010G212100 Sobic004G017000--Sobic002G321300 Sobic004G017000--Sobic004G276200 Sobic004G332100 Sobic004G332100 Sobic004G017000--Sobic004G332100 Sobic008G171000 Sobic008G171000 Sobic004G017000--Sobic008G171000 Sobic004G017000--Sobic002G229600 Sobic001G160800 Sobic001G160800 Sobic004G017000--Sobic001G160800 Sobic004G017000--Sobic004G073400 Sobic003G397500 Sobic003G397500 Sobic004G017000--Sobic003G397500 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G040800 Sobic003G040800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic009G216900 Sobic009G216900 Sobic003G233900--Sobic009G216900 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100
Octagon: transcription factors


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