Gene annotation
Transcriptome id Sobic.004G073400.1
Synonym
Functional annotation multidrug resistance protein, putative, expressed
UniProt C5XX23
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF141
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G28345 : ABC transporter family protein
RAP-DB (Rice) LOC_Os02g09720.1 : multidrug resistance protein, putative, expressed
MaizeGDB (Corn) Zm00025a034701 , Zm00025a020627
Brachypodium KQJ93765 , KQJ93764
Barley HORVU6Hr1G035040.14 , HORVU6Hr1G035040.10 , HORVU6Hr1G035040.11 , HORVU6Hr1G035040.4 , HORVU6Hr1G035040.3 , HORVU6Hr1G035040.8 , HORVU6Hr1G035040.16 , HORVU6Hr1G035040.17 , HORVU6Hr1G035040.15 , HORVU6Hr1G035040.12
Wheat TraesCS4A02G370600 , TraesCS6D02G161200 , TraesCS6D02G161200 , TraesCS6A02G171800 , TraesCS6B02G199700 , TraesCS7D02G068400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G182800 expressed protein -
2 Sobic.010G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@synthase, putative, expressed K02377: TSTA3, GDP-L-fucose synthase
3 Sobic.010G085400 down-regulated TF in developmental senescence(PubMedID : 27586543)@OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
4 Sobic.003G233900 - -
5 Sobic.003G423300 RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
6 Sobic.004G257350 - -
7 Sobic.009G128300 CUE domain containing protein, expressed -
8 Sobic.002G229600 - -
9 Sobic.001G509400 - -
10 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
11 Sobic.010G233450 - -
12 Sobic.003G066900 expressed protein -
13 Sobic.009G195800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
14 Sobic.003G059100 disease resistance protein, putative, expressed -
15 Sobic.003G040800 WRKY102, expressed -
16 Sobic.008G044750 - -
17 Sobic.003G402550 - -
18 Sobic.003G079800 Ser/Thr protein kinase, putative, expressed -
19 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
20 Sobic.002G331450 - -


Gene co-expression network
sample Sobic004G073400 Sobic004G073400 Sobic002G182800 Sobic002G182800 Sobic004G073400--Sobic002G182800 Sobic010G212100 Sobic010G212100 Sobic004G073400--Sobic010G212100 Sobic010G085400 Sobic010G085400 Sobic004G073400--Sobic010G085400 Sobic003G233900 Sobic003G233900 Sobic004G073400--Sobic003G233900 Sobic003G423300 Sobic003G423300 Sobic004G073400--Sobic003G423300 Sobic004G257350 Sobic004G257350 Sobic004G073400--Sobic004G257350 Sobic009G128300 Sobic009G128300 Sobic004G073400--Sobic009G128300 Sobic002G229600 Sobic002G229600 Sobic004G073400--Sobic002G229600 Sobic001G509400 Sobic001G509400 Sobic004G073400--Sobic001G509400 Sobic002G182800--Sobic009G128300 Sobic002G182800--Sobic001G509400 Sobic002G182800--Sobic003G233900 Sobic001G075101 Sobic001G075101 Sobic002G182800--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic002G182800--Sobic002G331450 Sobic003G227600 Sobic003G227600 Sobic002G182800--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic002G182800--Sobic003G040800 Sobic002G182800--Sobic010G085400 Sobic002G342100 Sobic002G342100 Sobic002G182800--Sobic002G342100 Sobic004G276200 Sobic004G276200 Sobic010G212100--Sobic004G276200 Sobic008G014200 Sobic008G014200 Sobic010G212100--Sobic008G014200 Sobic010G212100--Sobic004G073400 Sobic003G109832 Sobic003G109832 Sobic010G212100--Sobic003G109832 Sobic005G087800 Sobic005G087800 Sobic010G212100--Sobic005G087800 Sobic003G078501 Sobic003G078501 Sobic010G212100--Sobic003G078501 Sobic002G189000 Sobic002G189000 Sobic010G212100--Sobic002G189000 Sobic004G017000 Sobic004G017000 Sobic010G212100--Sobic004G017000 Sobic010G212100--Sobic003G233900 Sobic010G085400--Sobic002G182800 Sobic010G085400--Sobic002G331450 Sobic010G085400--Sobic009G128300 Sobic010G085400--Sobic003G040800 Sobic002G110200 Sobic002G110200 Sobic010G085400--Sobic002G110200 Sobic002G013900 Sobic002G013900 Sobic010G085400--Sobic002G013900 Sobic004G211301 Sobic004G211301 Sobic010G085400--Sobic004G211301 Sobic010G085400--Sobic003G233900 Sobic007G169600 Sobic007G169600 Sobic010G085400--Sobic007G169600 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic009G000700 Sobic009G000700 Sobic003G233900--Sobic009G000700 Sobic009G216900 Sobic009G216900 Sobic003G233900--Sobic009G216900 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic004G285100 Sobic004G285100 Sobic003G233900--Sobic004G285100 Sobic003G423300--Sobic002G182800 Sobic003G423300--Sobic010G085400 Sobic003G423300--Sobic001G509400 Sobic003G423300--Sobic002G331450 Sobic003G423300--Sobic002G110200 Sobic003G423300--Sobic007G169600 Sobic002G325600 Sobic002G325600 Sobic003G423300--Sobic002G325600 Sobic003G423300--Sobic009G128300 Sobic003G423300--Sobic003G040800 Sobic004G257350--Sobic003G233900 Sobic004G310600 Sobic004G310600 Sobic004G257350--Sobic004G310600 Sobic004G257350--Sobic009G000700 Sobic004G155150 Sobic004G155150 Sobic004G257350--Sobic004G155150 Sobic004G257350--Sobic003G040800 Sobic004G257350--Sobic003G227600 Sobic004G257350--Sobic009G128300 Sobic004G257350--Sobic003G066900 Sobic004G257350--Sobic003G078501 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic009G128300--Sobic001G509400 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic008G044750 Sobic008G044750 Sobic009G128300--Sobic008G044750 Sobic003G079800 Sobic003G079800 Sobic009G128300--Sobic003G079800 Sobic009G128300--Sobic001G075101 Sobic003G252400 Sobic003G252400 Sobic002G229600--Sobic003G252400 Sobic002G229600--Sobic004G211301 Sobic002G229600--Sobic002G013900 Sobic003G397500 Sobic003G397500 Sobic002G229600--Sobic003G397500 Sobic002G229600--Sobic003G066900 Sobic002G229600--Sobic004G257350 Sobic002G229600--Sobic003G233900 Sobic002G229600--Sobic002G331450 Sobic002G229600--Sobic002G189000 Sobic001G509400--Sobic008G044750 Sobic001G509400--Sobic009G128300 Sobic001G509400--Sobic002G182800 Sobic001G509400--Sobic001G075101 Sobic001G509400--Sobic002G331450 Sobic001G509400--Sobic002G325600 Sobic001G509400--Sobic003G079800 Sobic001G509400--Sobic007G169600 Sobic001G509400--Sobic003G227600
Octagon: transcription factors


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