Gene annotation
Transcriptome id Sobic.010G085400.1
Synonym Sb10g007380, AGL22, SVP
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
OsMADS22 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5Z6K5
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF36
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G22540 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os02g52340.1 : OsMADS22 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a049536
Brachypodium PNT76212
Barley HORVU7Hr1G036130.23 , HORVU7Hr1G036130.22 , HORVU7Hr1G036130.21 , HORVU7Hr1G036130.20 , HORVU7Hr1G036130.27 , HORVU7Hr1G036130.26 , HORVU7Hr1G036130.25 , HORVU7Hr1G036130.24 , HORVU7Hr1G036130.1 , HORVU7Hr1G036130.8 , HORVU7Hr1G036130.9
Wheat TraesCS7A02G175200 , TraesCS7A02G175200 , TraesCS7D02G176700 , TraesCS7B02G080300 , TraesCS7B02G080300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G182800 expressed protein -
2 Sobic.002G331450 - -
3 Sobic.009G128300 CUE domain containing protein, expressed -
4 Sobic.003G040800 WRKY102, expressed -
5 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
6 Sobic.002G013900 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
7 Sobic.004G211301 - -
8 Sobic.003G233900 - -
9 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
10 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
11 Sobic.001G075101 - -
12 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
13 Sobic.001G509400 - -
14 Sobic.002G342100 no apical meristem protein, putative, expressed -
15 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
16 Sobic.003G252400 drought induced 19 protein, putative, expressed -
17 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
18 Sobic.003G079800 Ser/Thr protein kinase, putative, expressed -
19 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
20 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein


Gene co-expression network
sample Sobic010G085400 Sobic010G085400 Sobic002G182800 Sobic002G182800 Sobic010G085400--Sobic002G182800 Sobic002G331450 Sobic002G331450 Sobic010G085400--Sobic002G331450 Sobic009G128300 Sobic009G128300 Sobic010G085400--Sobic009G128300 Sobic003G040800 Sobic003G040800 Sobic010G085400--Sobic003G040800 Sobic002G110200 Sobic002G110200 Sobic010G085400--Sobic002G110200 Sobic002G013900 Sobic002G013900 Sobic010G085400--Sobic002G013900 Sobic004G211301 Sobic004G211301 Sobic010G085400--Sobic004G211301 Sobic003G233900 Sobic003G233900 Sobic010G085400--Sobic003G233900 Sobic007G169600 Sobic007G169600 Sobic010G085400--Sobic007G169600 Sobic002G182800--Sobic009G128300 Sobic001G509400 Sobic001G509400 Sobic002G182800--Sobic001G509400 Sobic002G182800--Sobic003G233900 Sobic001G075101 Sobic001G075101 Sobic002G182800--Sobic001G075101 Sobic002G182800--Sobic002G331450 Sobic003G227600 Sobic003G227600 Sobic002G182800--Sobic003G227600 Sobic002G182800--Sobic003G040800 Sobic002G182800--Sobic010G085400 Sobic002G342100 Sobic002G342100 Sobic002G182800--Sobic002G342100 Sobic002G331450--Sobic007G169600 Sobic002G331450--Sobic001G075101 Sobic002G325600 Sobic002G325600 Sobic002G331450--Sobic002G325600 Sobic003G083000 Sobic003G083000 Sobic002G331450--Sobic003G083000 Sobic002G331450--Sobic002G110200 Sobic006G203000 Sobic006G203000 Sobic002G331450--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic002G331450--Sobic002G037400 Sobic002G331450--Sobic009G128300 Sobic002G331450--Sobic002G182800 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic009G128300--Sobic001G509400 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic008G044750 Sobic008G044750 Sobic009G128300--Sobic008G044750 Sobic003G079800 Sobic003G079800 Sobic009G128300--Sobic003G079800 Sobic009G128300--Sobic001G075101 Sobic001G106000 Sobic001G106000 Sobic003G040800--Sobic001G106000 Sobic003G040800--Sobic003G233900 Sobic003G040800--Sobic002G182800 Sobic003G040800--Sobic009G128300 Sobic003G040800--Sobic003G227600 Sobic009G216900 Sobic009G216900 Sobic003G040800--Sobic009G216900 Sobic004G285100 Sobic004G285100 Sobic003G040800--Sobic004G285100 Sobic003G017200 Sobic003G017200 Sobic003G040800--Sobic003G017200 Sobic003G040800--Sobic001G509400 Sobic002G110200--Sobic002G331450 Sobic002G110200--Sobic001G075101 Sobic002G110200--Sobic006G203000 Sobic002G110200--Sobic007G169600 Sobic002G110200--Sobic009G128300 Sobic002G110200--Sobic002G182800 Sobic002G110200--Sobic002G013900 Sobic002G110200--Sobic001G509400 Sobic004G170032 Sobic004G170032 Sobic002G110200--Sobic004G170032 Sobic002G013900--Sobic003G233900 Sobic002G013900--Sobic009G128300 Sobic002G013900--Sobic002G110200 Sobic002G189000 Sobic002G189000 Sobic002G013900--Sobic002G189000 Sobic002G013900--Sobic002G182800 Sobic002G013900--Sobic002G331450 Sobic002G013900--Sobic003G227600 Sobic002G013900--Sobic010G085400 Sobic002G013900--Sobic003G040800 Sobic004G211301--Sobic002G331450 Sobic004G211301--Sobic009G128300 Sobic003G252400 Sobic003G252400 Sobic004G211301--Sobic003G252400 Sobic004G211301--Sobic010G085400 Sobic005G060600 Sobic005G060600 Sobic004G211301--Sobic005G060600 Sobic004G211301--Sobic002G182800 Sobic004G211301--Sobic003G233900 Sobic004G211301--Sobic002G110200 Sobic004G211301--Sobic002G013900 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic009G000700 Sobic009G000700 Sobic003G233900--Sobic009G000700 Sobic003G233900--Sobic009G216900 Sobic004G257350 Sobic004G257350 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic005G016900 Sobic005G016900 Sobic007G169600--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic007G169600--Sobic007G143100 Sobic007G169600--Sobic002G325600 Sobic007G143200 Sobic007G143200 Sobic007G169600--Sobic007G143200
Octagon: transcription factors


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