Gene annotation
| Transcriptome id | Sobic.004G332100.1 |
|---|---|
| Synonym | Sb04g036095 |
| Functional annotation | zinc finger, C3HC4 type domain containing protein, expressed |
| UniProt | A0A194YSR1 |
| Pfam | PF13639 |
| Panther DB | PTHR14155 PTHR14155:SF118 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008270; zinc ion binding GO:0005515protein binding |
Orthologs (automatic annotation)
| TAIR | AT2G15580 : RING/U-box superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g55480.1 : zinc finger, C3HC4 type domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a022487 |
| Brachypodium | KQK01171 |
| Barley | - |
| Wheat | TraesCS6D02G344900 , TraesCS6D02G344900 , TraesCS7A02G144900 , TraesCS7A02G144900 , TraesCS6B02G395000 , TraesCS6A02G361600 , TraesCS6A02G361600 , TraesCSU02G147000 |
| Populus | - |
JBrowse
| Sobic.004G332100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G391300 | "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed | K18819: inositol 3-alpha-galactosyltransferase |
| 2 | Sobic.007G160200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed | K15104: SLC25A11, solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11 |
| 3 | Sobic.006G220300 | - | - |
| 4 | Sobic.003G339700 | Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 5 | Sobic.001G110900 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 6 | Sobic.002G086800 | expressed protein | - |
| 7 | Sobic.009G069300 | actin binding protein family(PubMedID : 26465154)@AR791, putative, expressed | - |
| 8 | Sobic.001G470900 | sulfate transporter, putative, expressed | K17469: sulfate transporter 2, low-affinity |
| 9 | Sobic.001G087700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed | - |
| 10 | Sobic.004G276200 | peptide transporter PTR2, putative, expressed | - |
| 11 | Sobic.001G498000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 12 | Sobic.003G334000 | expressed protein | - |
| 13 | Sobic.008G149000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed | - |
| 14 | Sobic.003G051000 | expressed protein | - |
| 15 | Sobic.007G062200 | expressed protein | - |
| 16 | Sobic.003G313900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed | - |
| 17 | Sobic.002G201900 | transporter family protein, putative, expressed | - |
| 18 | Sobic.008G171000 | methyltransferase domain containing protein, putative, expressed | K12502: VTE3, MPBQ/MSBQ methyltransferase |
| 19 | Sobic.001G426800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed | - |
| 20 | Sobic.003G263001 | - | - |
Gene co-expression network
Octagon: transcription factors
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