Gene annotation
Transcriptome id Sobic.001G110900.1
Synonym Sb01g009870, ATMYB54, MYB54
Functional annotation MYB family transcription factor, putative, expressed
UniProt C5WMY1
Pfam PF00249
Panther DB PTHR10641 PTHR10641:SF665
NCBI CDD KOG0048; Transcription factor, Myb superfamily
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17950 : myb domain protein 52
RAP-DB (Rice) LOC_Os03g51110.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a042083 , Zm00025a016934 , Zm00025a025677 , Zm00025a007925 , Zm00025a012707 , Zm00025a051434 , Zm00025a024116 , Zm00025a024118 , Zm00025a035220
Brachypodium KQJ89007 , KQK13489 , PNT66057 , KQK16730 , KQJ98405 , KQK03874
Barley HORVU3Hr1G096010.5 , HORVU3Hr1G096010.4 , HORVU3Hr1G038700.5 , HORVU3Hr1G038700.4 , HORVU3Hr1G038700.6 , HORVU3Hr1G038700.3 , HORVU3Hr1G038700.2 , HORVU3Hr1G038700.9 , HORVU6Hr1G035470.1 , HORVU6Hr1G035470.2 , HORVU4Hr1G008640.1 , HORVU4Hr1G008640.2 , HORVU4Hr1G008640.3 , HORVU4Hr1G008640.4 , HORVU4Hr1G008640.5 , HORVU4Hr1G008640.6 , HORVU4Hr1G008640.7 , HORVU4Hr1G008640.8 , HORVU7Hr1G116760.1 , HORVU3Hr1G096010.7 , HORVU3Hr1G096010.6 , HORVU3Hr1G096010.1 , HORVU3Hr1G096010.3 , HORVU3Hr1G096010.2
Wheat TraesCS4B02G052400 , TraesCS4B02G052400 , TraesCS3D02G432300 , TraesCS3D02G432300 , TraesCS3B02G473600 , TraesCS4D02G052600 , TraesCS3B02G217100 , TraesCS4D02G102100 , TraesCS4A02G262500 , TraesCS4A02G262500 , TraesCS4A02G262500 , TraesCS3A02G187800 , TraesCS3D02G191400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G220300 - -
2 Sobic.003G272400 DUF292 domain containing protein, expressed -
3 Sobic.001G140200 Homeobox domain containing protein, expressed -
4 Sobic.003G198150 - -
5 Sobic.010G233450 - -
6 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.001G509400 - -
8 Sobic.002G013900 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
9 Sobic.005G209500 expressed protein -
10 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G229000 cytochrome P450 72A1, putative, expressed -
12 Sobic.008G044750 - -
13 Sobic.002G216400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.002G331450 - -
15 Sobic.003G234800 membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
17 Sobic.009G128300 CUE domain containing protein, expressed -
18 Sobic.001G045600 remorin, putative, expressed -
19 Sobic.003G066900 expressed protein -
20 Sobic.001G087700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -


Gene co-expression network
sample Sobic001G110900 Sobic001G110900 Sobic006G220300 Sobic006G220300 Sobic001G110900--Sobic006G220300 Sobic003G272400 Sobic003G272400 Sobic001G110900--Sobic003G272400 Sobic001G140200 Sobic001G140200 Sobic001G110900--Sobic001G140200 Sobic003G198150 Sobic003G198150 Sobic001G110900--Sobic003G198150 Sobic010G233450 Sobic010G233450 Sobic001G110900--Sobic010G233450 Sobic002G110200 Sobic002G110200 Sobic001G110900--Sobic002G110200 Sobic001G509400 Sobic001G509400 Sobic001G110900--Sobic001G509400 Sobic002G013900 Sobic002G013900 Sobic001G110900--Sobic002G013900 Sobic005G209500 Sobic005G209500 Sobic001G110900--Sobic005G209500 Sobic006G220200 Sobic006G220200 Sobic006G220300--Sobic006G220200 Sobic006G220300--Sobic001G110900 Sobic009G155700 Sobic009G155700 Sobic006G220300--Sobic009G155700 Sobic002G216400 Sobic002G216400 Sobic006G220300--Sobic002G216400 Sobic001G087700 Sobic001G087700 Sobic006G220300--Sobic001G087700 Sobic004G332100 Sobic004G332100 Sobic006G220300--Sobic004G332100 Sobic001G470900 Sobic001G470900 Sobic006G220300--Sobic001G470900 Sobic001G045600 Sobic001G045600 Sobic006G220300--Sobic001G045600 Sobic010G260300 Sobic010G260300 Sobic006G220300--Sobic010G260300 Sobic004G353600 Sobic004G353600 Sobic003G272400--Sobic004G353600 Sobic003G281900 Sobic003G281900 Sobic003G272400--Sobic003G281900 Sobic003G252400 Sobic003G252400 Sobic003G272400--Sobic003G252400 Sobic002G306000 Sobic002G306000 Sobic003G272400--Sobic002G306000 Sobic003G272400--Sobic010G260300 Sobic003G126300 Sobic003G126300 Sobic003G272400--Sobic003G126300 Sobic006G207900 Sobic006G207900 Sobic003G272400--Sobic006G207900 Sobic003G272400--Sobic001G110900 Sobic004G309600 Sobic004G309600 Sobic003G272400--Sobic004G309600 Sobic010G054500 Sobic010G054500 Sobic001G140200--Sobic010G054500 Sobic008G052500 Sobic008G052500 Sobic001G140200--Sobic008G052500 Sobic001G140200--Sobic001G509400 Sobic008G044750 Sobic008G044750 Sobic001G140200--Sobic008G044750 Sobic008G065400 Sobic008G065400 Sobic001G140200--Sobic008G065400 Sobic002G325600 Sobic002G325600 Sobic001G140200--Sobic002G325600 Sobic001G075101 Sobic001G075101 Sobic001G140200--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic001G140200--Sobic007G169600 Sobic005G079700 Sobic005G079700 Sobic001G140200--Sobic005G079700 Sobic003G198150--Sobic008G044750 Sobic003G198200 Sobic003G198200 Sobic003G198150--Sobic003G198200 Sobic009G128300 Sobic009G128300 Sobic003G198150--Sobic009G128300 Sobic003G198150--Sobic001G509400 Sobic003G079800 Sobic003G079800 Sobic003G198150--Sobic003G079800 Sobic003G227600 Sobic003G227600 Sobic003G198150--Sobic003G227600 Sobic004G170032 Sobic004G170032 Sobic003G198150--Sobic004G170032 Sobic003G233900 Sobic003G233900 Sobic003G198150--Sobic003G233900 Sobic001G450800 Sobic001G450800 Sobic003G198150--Sobic001G450800 Sobic002G197650 Sobic002G197650 Sobic010G233450--Sobic002G197650 Sobic010G233450--Sobic001G509400 Sobic002G331450 Sobic002G331450 Sobic010G233450--Sobic002G331450 Sobic010G233450--Sobic007G169600 Sobic010G233450--Sobic002G325600 Sobic010G233450--Sobic001G075101 Sobic010G233450--Sobic002G110200 Sobic002G182800 Sobic002G182800 Sobic010G233450--Sobic002G182800 Sobic006G203000 Sobic006G203000 Sobic010G233450--Sobic006G203000 Sobic002G110200--Sobic002G331450 Sobic002G110200--Sobic001G075101 Sobic002G110200--Sobic006G203000 Sobic002G110200--Sobic007G169600 Sobic002G110200--Sobic009G128300 Sobic002G110200--Sobic002G182800 Sobic002G110200--Sobic002G013900 Sobic002G110200--Sobic001G509400 Sobic002G110200--Sobic004G170032 Sobic001G509400--Sobic008G044750 Sobic001G509400--Sobic009G128300 Sobic001G509400--Sobic002G182800 Sobic001G509400--Sobic001G075101 Sobic001G509400--Sobic002G331450 Sobic001G509400--Sobic002G325600 Sobic001G509400--Sobic003G079800 Sobic001G509400--Sobic007G169600 Sobic001G509400--Sobic003G227600 Sobic002G013900--Sobic003G233900 Sobic002G013900--Sobic009G128300 Sobic002G013900--Sobic002G110200 Sobic002G189000 Sobic002G189000 Sobic002G013900--Sobic002G189000 Sobic002G013900--Sobic002G182800 Sobic002G013900--Sobic002G331450 Sobic002G013900--Sobic003G227600 Sobic010G085400 Sobic010G085400 Sobic002G013900--Sobic010G085400 Sobic003G040800 Sobic003G040800 Sobic002G013900--Sobic003G040800 Sobic003G229000 Sobic003G229000 Sobic005G209500--Sobic003G229000 Sobic005G209500--Sobic010G260300 Sobic005G209500--Sobic001G110900 Sobic005G209500--Sobic003G272400 Sobic010G140500 Sobic010G140500 Sobic005G209500--Sobic010G140500 Sobic005G209500--Sobic002G189000 Sobic007G025800 Sobic007G025800 Sobic005G209500--Sobic007G025800 Sobic001G236400 Sobic001G236400 Sobic005G209500--Sobic001G236400 Sobic005G209500--Sobic003G252400
Octagon: transcription factors


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