Gene annotation
Transcriptome id Sobic.003G234800.1
Synonym Sb03g029220
Functional annotation membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5XEK4
Pfam PF04535
Panther DB PTHR33573 PTHR33573:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36330 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os01g45360.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038669
Brachypodium -
Barley -
Wheat TraesCS3D02G223000 , TraesCS3B02G259600 , TraesCS3A02G230300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
2 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
3 Sobic.002G182800 expressed protein -
4 Sobic.009G128300 CUE domain containing protein, expressed -
5 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
6 Sobic.010G085400 down-regulated TF in developmental senescence(PubMedID : 27586543)@OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
7 Sobic.002G110200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
8 Sobic.002G331450 - -
9 Sobic.002G013900 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
10 Sobic.004G211301 - -
11 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
12 Sobic.001G095750 - -
13 Sobic.003G087100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
15 Sobic.001G075101 - -
16 Sobic.006G026400 - -
17 Sobic.002G197650 - -
18 Sobic.003G233900 - -
19 Sobic.003G252400 drought induced 19 protein, putative, expressed -
20 Sobic.010G272101 - -


Gene co-expression network
sample Sobic003G234800 Sobic003G234800 Sobic002G189000 Sobic002G189000 Sobic003G234800--Sobic002G189000 Sobic006G203000 Sobic006G203000 Sobic003G234800--Sobic006G203000 Sobic002G182800 Sobic002G182800 Sobic003G234800--Sobic002G182800 Sobic009G128300 Sobic009G128300 Sobic003G234800--Sobic009G128300 Sobic003G227600 Sobic003G227600 Sobic003G234800--Sobic003G227600 Sobic010G085400 Sobic010G085400 Sobic003G234800--Sobic010G085400 Sobic002G110200 Sobic002G110200 Sobic003G234800--Sobic002G110200 Sobic002G331450 Sobic002G331450 Sobic003G234800--Sobic002G331450 Sobic002G013900 Sobic002G013900 Sobic003G234800--Sobic002G013900 Sobic002G189000--Sobic002G013900 Sobic003G233900 Sobic003G233900 Sobic002G189000--Sobic003G233900 Sobic002G271100 Sobic002G271100 Sobic002G189000--Sobic002G271100 Sobic010G260300 Sobic010G260300 Sobic002G189000--Sobic010G260300 Sobic002G189000--Sobic009G128300 Sobic002G189000--Sobic002G110200 Sobic003G225900 Sobic003G225900 Sobic002G189000--Sobic003G225900 Sobic004G155150 Sobic004G155150 Sobic002G189000--Sobic004G155150 Sobic004G285100 Sobic004G285100 Sobic002G189000--Sobic004G285100 Sobic002G037400 Sobic002G037400 Sobic006G203000--Sobic002G037400 Sobic001G075101 Sobic001G075101 Sobic006G203000--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic003G083000 Sobic003G083000 Sobic006G203000--Sobic003G083000 Sobic002G325600 Sobic002G325600 Sobic006G203000--Sobic002G325600 Sobic006G026400 Sobic006G026400 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic006G203000--Sobic002G110200 Sobic002G182800--Sobic009G128300 Sobic001G509400 Sobic001G509400 Sobic002G182800--Sobic001G509400 Sobic002G182800--Sobic003G233900 Sobic002G182800--Sobic001G075101 Sobic002G182800--Sobic002G331450 Sobic002G182800--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic002G182800--Sobic003G040800 Sobic002G182800--Sobic010G085400 Sobic002G342100 Sobic002G342100 Sobic002G182800--Sobic002G342100 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic009G128300--Sobic001G509400 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic008G044750 Sobic008G044750 Sobic009G128300--Sobic008G044750 Sobic003G079800 Sobic003G079800 Sobic009G128300--Sobic003G079800 Sobic009G128300--Sobic001G075101 Sobic003G227600--Sobic009G128300 Sobic009G216900 Sobic009G216900 Sobic003G227600--Sobic009G216900 Sobic003G227600--Sobic003G233900 Sobic003G227600--Sobic002G182800 Sobic003G227600--Sobic003G040800 Sobic003G227600--Sobic002G342100 Sobic003G227600--Sobic001G509400 Sobic003G227600--Sobic001G075101 Sobic003G227600--Sobic002G331450 Sobic010G085400--Sobic002G182800 Sobic010G085400--Sobic002G331450 Sobic010G085400--Sobic009G128300 Sobic010G085400--Sobic003G040800 Sobic010G085400--Sobic002G110200 Sobic010G085400--Sobic002G013900 Sobic004G211301 Sobic004G211301 Sobic010G085400--Sobic004G211301 Sobic010G085400--Sobic003G233900 Sobic010G085400--Sobic007G169600 Sobic002G110200--Sobic002G331450 Sobic002G110200--Sobic001G075101 Sobic002G110200--Sobic006G203000 Sobic002G110200--Sobic007G169600 Sobic002G110200--Sobic009G128300 Sobic002G110200--Sobic002G182800 Sobic002G110200--Sobic002G013900 Sobic002G110200--Sobic001G509400 Sobic004G170032 Sobic004G170032 Sobic002G110200--Sobic004G170032 Sobic002G331450--Sobic007G169600 Sobic002G331450--Sobic001G075101 Sobic002G331450--Sobic002G325600 Sobic002G331450--Sobic003G083000 Sobic002G331450--Sobic002G110200 Sobic002G331450--Sobic006G203000 Sobic002G331450--Sobic002G037400 Sobic002G331450--Sobic009G128300 Sobic002G331450--Sobic002G182800 Sobic002G013900--Sobic003G233900 Sobic002G013900--Sobic009G128300 Sobic002G013900--Sobic002G110200 Sobic002G013900--Sobic002G189000 Sobic002G013900--Sobic002G182800 Sobic002G013900--Sobic002G331450 Sobic002G013900--Sobic003G227600 Sobic002G013900--Sobic010G085400 Sobic002G013900--Sobic003G040800
Octagon: transcription factors


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