Gene annotation
Transcriptome id Sobic.001G086500.1
Synonym Sb01g007790, AP1, AGL7
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
OsMADS14 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5X094 , Q0PLM4
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF218
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G69120 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os03g54160.2 : OsMADS14 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a021527 , Zm00025a016241 , Zm00025a032331 , Zm00025a026557 , Zm00025a047585 , Zm00025a005260 , Zm00025a005261 , Zm00025a041962 , Zm00025a008189 , Zm00025a014307 , Zm00025a016785 , Zm00025a048701
Brachypodium KQK15335 , KQK15334 , KQK15336 , KQK13150 , KQJ90931
Barley HORVU3Hr1G091000.3 , HORVU3Hr1G091000.2 , HORVU3Hr1G091000.1 , HORVU3Hr1G091000.6 , HORVU3Hr1G091000.5 , HORVU3Hr1G091000.4 , HORVU3Hr1G091000.9 , HORVU3Hr1G091000.8 , HORVU5Hr1G095630.6 , HORVU5Hr1G095630.7 , HORVU5Hr1G095630.2 , HORVU5Hr1G095630.3 , HORVU5Hr1G095630.1 , HORVU5Hr1G095630.8 , HORVU5Hr1G095630.9 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU3Hr1G091000.13 , HORVU3Hr1G091000.12 , HORVU3Hr1G091000.11 , HORVU3Hr1G091000.10 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS7D02G261600 , TraesCS5D02G294500 , TraesCS5A02G286800 , TraesCS3A02G406500 , TraesCS3A02G406500 , TraesCS7B02G158600 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS3B02G440200 , TraesCS2B02G200800 , TraesCS3D02G401700 , TraesCS3D02G401700 , TraesCS3B02G440200 , TraesCS3B02G440200 , TraesCS5A02G391700 , TraesCS5A02G391700 , TraesCS5B02G396600 , TraesCS5B02G396600 , TraesCS2A02G174300 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600
Populus -


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cDNA sequences
Sobic.001G086500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G325600 ankyrin repeat family protein, putative, expressed -
2 Sobic.008G075600 - -
3 Sobic.002G331450 - -
4 Sobic.005G060600 - -
5 Sobic.010G085400 down-regulated TF in developmental senescence(PubMedID : 27586543)@OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
6 Sobic.007G153001 - -
7 Sobic.003G252400 drought induced 19 protein, putative, expressed -
8 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
9 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
10 Sobic.003G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
11 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
12 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
13 Sobic.007G073750 - -
14 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
15 Sobic.001G075101 - -
16 Sobic.004G211301 - -
17 Sobic.009G076700 expressed protein -
18 Sobic.002G023900 Homeobox domain containing protein, expressed -
19 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
20 Sobic.010G201200 expressed protein -


Gene co-expression network
sample Sobic001G086500 Sobic001G086500 Sobic002G325600 Sobic002G325600 Sobic001G086500--Sobic002G325600 Sobic008G075600 Sobic008G075600 Sobic001G086500--Sobic008G075600 Sobic002G331450 Sobic002G331450 Sobic001G086500--Sobic002G331450 Sobic005G060600 Sobic005G060600 Sobic001G086500--Sobic005G060600 Sobic010G085400 Sobic010G085400 Sobic001G086500--Sobic010G085400 Sobic007G153001 Sobic007G153001 Sobic001G086500--Sobic007G153001 Sobic003G252400 Sobic003G252400 Sobic001G086500--Sobic003G252400 Sobic005G016900 Sobic005G016900 Sobic001G086500--Sobic005G016900 Sobic007G169600 Sobic007G169600 Sobic001G086500--Sobic007G169600 Sobic002G325600--Sobic007G169600 Sobic002G325600--Sobic002G331450 Sobic001G075101 Sobic001G075101 Sobic002G325600--Sobic001G075101 Sobic003G083000 Sobic003G083000 Sobic002G325600--Sobic003G083000 Sobic006G203000 Sobic006G203000 Sobic002G325600--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic002G325600--Sobic002G037400 Sobic001G509400 Sobic001G509400 Sobic002G325600--Sobic001G509400 Sobic002G325600--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic002G325600--Sobic007G143100 Sobic008G075600--Sobic002G325600 Sobic008G075600--Sobic007G143100 Sobic008G075600--Sobic007G169600 Sobic009G076700 Sobic009G076700 Sobic008G075600--Sobic009G076700 Sobic008G075600--Sobic002G331450 Sobic008G075600--Sobic005G016900 Sobic007G143200 Sobic007G143200 Sobic008G075600--Sobic007G143200 Sobic003G397500 Sobic003G397500 Sobic008G075600--Sobic003G397500 Sobic007G073750 Sobic007G073750 Sobic008G075600--Sobic007G073750 Sobic002G331450--Sobic007G169600 Sobic002G331450--Sobic001G075101 Sobic002G331450--Sobic002G325600 Sobic002G331450--Sobic003G083000 Sobic002G110200 Sobic002G110200 Sobic002G331450--Sobic002G110200 Sobic002G331450--Sobic006G203000 Sobic002G331450--Sobic002G037400 Sobic009G128300 Sobic009G128300 Sobic002G331450--Sobic009G128300 Sobic002G182800 Sobic002G182800 Sobic002G331450--Sobic002G182800 Sobic004G211301 Sobic004G211301 Sobic005G060600--Sobic004G211301 Sobic005G060600--Sobic003G252400 Sobic006G056800 Sobic006G056800 Sobic005G060600--Sobic006G056800 Sobic005G060600--Sobic002G331450 Sobic005G060600--Sobic003G397500 Sobic001G112000 Sobic001G112000 Sobic005G060600--Sobic001G112000 Sobic005G060600--Sobic002G325600 Sobic008G031300 Sobic008G031300 Sobic005G060600--Sobic008G031300 Sobic005G060600--Sobic010G085400 Sobic010G085400--Sobic002G182800 Sobic010G085400--Sobic002G331450 Sobic010G085400--Sobic009G128300 Sobic003G040800 Sobic003G040800 Sobic010G085400--Sobic003G040800 Sobic010G085400--Sobic002G110200 Sobic002G013900 Sobic002G013900 Sobic010G085400--Sobic002G013900 Sobic010G085400--Sobic004G211301 Sobic003G233900 Sobic003G233900 Sobic010G085400--Sobic003G233900 Sobic010G085400--Sobic007G169600 Sobic007G153001--Sobic001G075101 Sobic007G153001--Sobic007G169600 Sobic007G153001--Sobic003G083000 Sobic002G023900 Sobic002G023900 Sobic007G153001--Sobic002G023900 Sobic002G342100 Sobic002G342100 Sobic007G153001--Sobic002G342100 Sobic007G153001--Sobic002G331450 Sobic007G153001--Sobic002G037400 Sobic007G153001--Sobic006G203000 Sobic007G153001--Sobic002G325600 Sobic003G252400--Sobic002G331450 Sobic003G252400--Sobic004G211301 Sobic003G252400--Sobic003G397500 Sobic003G252400--Sobic002G110200 Sobic003G252400--Sobic010G085400 Sobic003G252400--Sobic005G060600 Sobic003G252400--Sobic002G013900 Sobic003G252400--Sobic002G325600 Sobic007G131700 Sobic007G131700 Sobic003G252400--Sobic007G131700 Sobic005G016900--Sobic007G143100 Sobic005G016900--Sobic007G073750 Sobic005G016900--Sobic007G143200 Sobic005G016900--Sobic009G076700 Sobic003G397400 Sobic003G397400 Sobic005G016900--Sobic003G397400 Sobic005G016900--Sobic007G169600 Sobic005G016900--Sobic003G083000 Sobic005G016900--Sobic002G037400 Sobic005G016900--Sobic001G075101 Sobic007G169600--Sobic001G075101 Sobic007G169600--Sobic003G083000 Sobic007G169600--Sobic002G331450 Sobic007G169600--Sobic002G037400 Sobic007G169600--Sobic006G203000 Sobic007G169600--Sobic005G016900 Sobic007G169600--Sobic007G143100 Sobic007G169600--Sobic002G325600 Sobic007G169600--Sobic007G143200
Octagon: transcription factors


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