Gene annotation
Transcriptome id Sobic.005G040500.1,Sobic.005G040500.3
Synonym Sb05g003360
Functional annotation OsFBX399 - F-box domain containing protein, expressed
UniProt A0A1Z5RHR4 , C5Y505
Pfam PF00646
Panther DB PTHR32212:SF105 PTHR32212 PTHR32212 PTHR32212:SF105
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G56810 : F-box/RNI-like/FBD-like domains-containing protein
RAP-DB (Rice) LOC_Os11g09418.1 : OsFBX399 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G241300 expressed protein -
2 Sobic.003G151200 WD domain, G-beta repeat domain containing protein, expressed K13111: WD40 repeat-containing protein SMU1
3 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
4 Sobic.003G050700 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
5 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
6 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
7 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
8 Sobic.009G112300 kinase, pfkB family, putative, expressed -
9 Sobic.003G312700 glycosyl hydrolase family 47 domain contain protein, expressed K10085: ER degradation enhancer, mannosidase alpha-like 2
10 Sobic.005G056500 integrator complex subunit 3, putative, expressed K13140: integrator complex subunit 3
11 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
12 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
13 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
14 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
15 Sobic.001G229300 expressed protein -
16 Sobic.006G178100 coiled-coil domain-containing protein 139, putative, expressed K07583: tRNA pseudouridine synthase 10
17 Sobic.001G542450 - -
18 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
19 Sobic.004G030400 expressed protein -
20 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial


Gene co-expression network
sample Sobic005G040500 Sobic005G040500 Sobic001G241300 Sobic001G241300 Sobic005G040500--Sobic001G241300 Sobic003G151200 Sobic003G151200 Sobic005G040500--Sobic003G151200 Sobic001G408600 Sobic001G408600 Sobic005G040500--Sobic001G408600 Sobic003G050700 Sobic003G050700 Sobic005G040500--Sobic003G050700 Sobic007G016900 Sobic007G016900 Sobic005G040500--Sobic007G016900 Sobic001G487100 Sobic001G487100 Sobic005G040500--Sobic001G487100 Sobic003G246000 Sobic003G246000 Sobic005G040500--Sobic003G246000 Sobic009G112300 Sobic009G112300 Sobic005G040500--Sobic009G112300 Sobic003G312700 Sobic003G312700 Sobic005G040500--Sobic003G312700 Sobic001G241300--Sobic001G408600 Sobic001G241300--Sobic003G246000 Sobic001G085800 Sobic001G085800 Sobic001G241300--Sobic001G085800 Sobic007G102700 Sobic007G102700 Sobic001G241300--Sobic007G102700 Sobic001G013300 Sobic001G013300 Sobic001G241300--Sobic001G013300 Sobic001G401500 Sobic001G401500 Sobic001G241300--Sobic001G401500 Sobic006G270600 Sobic006G270600 Sobic001G241300--Sobic006G270600 Sobic002G005000 Sobic002G005000 Sobic001G241300--Sobic002G005000 Sobic008G147200 Sobic008G147200 Sobic001G241300--Sobic008G147200 Sobic010G174700 Sobic010G174700 Sobic003G151200--Sobic010G174700 Sobic001G248100 Sobic001G248100 Sobic003G151200--Sobic001G248100 Sobic001G151100 Sobic001G151100 Sobic003G151200--Sobic001G151100 Sobic003G308500 Sobic003G308500 Sobic003G151200--Sobic003G308500 Sobic001G087600 Sobic001G087600 Sobic003G151200--Sobic001G087600 Sobic004G053500 Sobic004G053500 Sobic003G151200--Sobic004G053500 Sobic002G371600 Sobic002G371600 Sobic003G151200--Sobic002G371600 Sobic003G296900 Sobic003G296900 Sobic003G151200--Sobic003G296900 Sobic003G221400 Sobic003G221400 Sobic003G151200--Sobic003G221400 Sobic001G408600--Sobic003G246000 Sobic001G373000 Sobic001G373000 Sobic001G408600--Sobic001G373000 Sobic001G461300 Sobic001G461300 Sobic001G408600--Sobic001G461300 Sobic007G089800 Sobic007G089800 Sobic001G408600--Sobic007G089800 Sobic001G004100 Sobic001G004100 Sobic001G408600--Sobic001G004100 Sobic006G125900 Sobic006G125900 Sobic001G408600--Sobic006G125900 Sobic009G211200 Sobic009G211200 Sobic001G408600--Sobic009G211200 Sobic006G002800 Sobic006G002800 Sobic001G408600--Sobic006G002800 Sobic001G145400 Sobic001G145400 Sobic001G408600--Sobic001G145400 Sobic005G160200 Sobic005G160200 Sobic003G050700--Sobic005G160200 Sobic003G411700 Sobic003G411700 Sobic003G050700--Sobic003G411700 Sobic007G221700 Sobic007G221700 Sobic003G050700--Sobic007G221700 Sobic010G222800 Sobic010G222800 Sobic003G050700--Sobic010G222800 Sobic007G096800 Sobic007G096800 Sobic003G050700--Sobic007G096800 Sobic004G278900 Sobic004G278900 Sobic003G050700--Sobic004G278900 Sobic003G343200 Sobic003G343200 Sobic003G050700--Sobic003G343200 Sobic006G184200 Sobic006G184200 Sobic003G050700--Sobic006G184200 Sobic010G187900 Sobic010G187900 Sobic003G050700--Sobic010G187900 Sobic006G245900 Sobic006G245900 Sobic007G016900--Sobic006G245900 Sobic007G187600 Sobic007G187600 Sobic007G016900--Sobic007G187600 Sobic003G413100 Sobic003G413100 Sobic007G016900--Sobic003G413100 Sobic003G010900 Sobic003G010900 Sobic007G016900--Sobic003G010900 Sobic004G345400 Sobic004G345400 Sobic007G016900--Sobic004G345400 Sobic001G042200 Sobic001G042200 Sobic007G016900--Sobic001G042200 Sobic002G343200 Sobic002G343200 Sobic007G016900--Sobic002G343200 Sobic003G113300 Sobic003G113300 Sobic007G016900--Sobic003G113300 Sobic009G040800 Sobic009G040800 Sobic007G016900--Sobic009G040800 Sobic003G132000 Sobic003G132000 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic003G246000--Sobic001G085800 Sobic003G246000--Sobic001G408600 Sobic004G141800 Sobic004G141800 Sobic003G246000--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic003G246000--Sobic002G430300 Sobic003G246000--Sobic001G145400 Sobic002G386600 Sobic002G386600 Sobic003G246000--Sobic002G386600 Sobic003G246000--Sobic006G125900 Sobic002G160700 Sobic002G160700 Sobic003G246000--Sobic002G160700 Sobic005G199200 Sobic005G199200 Sobic003G246000--Sobic005G199200 Sobic002G220200 Sobic002G220200 Sobic009G112300--Sobic002G220200 Sobic002G199400 Sobic002G199400 Sobic009G112300--Sobic002G199400 Sobic005G150600 Sobic005G150600 Sobic009G112300--Sobic005G150600 Sobic004G030400 Sobic004G030400 Sobic009G112300--Sobic004G030400 Sobic009G113100 Sobic009G113100 Sobic009G112300--Sobic009G113100 Sobic009G112300--Sobic002G343200 Sobic006G141600 Sobic006G141600 Sobic009G112300--Sobic006G141600 Sobic006G282200 Sobic006G282200 Sobic009G112300--Sobic006G282200 Sobic002G076500 Sobic002G076500 Sobic009G112300--Sobic002G076500 Sobic003G312700--Sobic001G087600 Sobic001G014300 Sobic001G014300 Sobic003G312700--Sobic001G014300 Sobic003G405500 Sobic003G405500 Sobic003G312700--Sobic003G405500 Sobic003G312700--Sobic004G141800 Sobic003G312700--Sobic002G430300 Sobic004G355800 Sobic004G355800 Sobic003G312700--Sobic004G355800 Sobic003G152400 Sobic003G152400 Sobic003G312700--Sobic003G152400 Sobic002G063900 Sobic002G063900 Sobic003G312700--Sobic002G063900 Sobic008G140700 Sobic008G140700 Sobic003G312700--Sobic008G140700
Octagon: transcription factors


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