Gene annotation
Transcriptome id Sobic.001G241300.1,Sobic.001G241300.2
Synonym Sb01g021360
Functional annotation expressed protein
UniProt C5X1D7 , C5X0K6
Pfam -
Panther DB PTHR35986 PTHR35986:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g29514.1 : expressed protein
MaizeGDB (Corn) Zm00025a017767
Brachypodium -
Barley -
Wheat TraesCS5B02G379600
Populus -


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cDNA sequences
Sobic.001G241300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
2 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
3 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
4 Sobic.007G102700 - -
5 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
6 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
7 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
8 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
9 Sobic.008G147200 tubulin, putative, expressed -
10 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
11 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
12 Sobic.010G186600 expressed protein -
13 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
14 Sobic.004G356200 expressed protein -
15 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
16 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
17 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
18 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
19 Sobic.004G067400 expressed protein -
20 Sobic.004G155600 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic001G241300 Sobic001G241300 Sobic001G408600 Sobic001G408600 Sobic001G241300--Sobic001G408600 Sobic003G246000 Sobic003G246000 Sobic001G241300--Sobic003G246000 Sobic001G085800 Sobic001G085800 Sobic001G241300--Sobic001G085800 Sobic007G102700 Sobic007G102700 Sobic001G241300--Sobic007G102700 Sobic001G013300 Sobic001G013300 Sobic001G241300--Sobic001G013300 Sobic001G401500 Sobic001G401500 Sobic001G241300--Sobic001G401500 Sobic006G270600 Sobic006G270600 Sobic001G241300--Sobic006G270600 Sobic002G005000 Sobic002G005000 Sobic001G241300--Sobic002G005000 Sobic008G147200 Sobic008G147200 Sobic001G241300--Sobic008G147200 Sobic001G408600--Sobic003G246000 Sobic001G373000 Sobic001G373000 Sobic001G408600--Sobic001G373000 Sobic001G461300 Sobic001G461300 Sobic001G408600--Sobic001G461300 Sobic007G089800 Sobic007G089800 Sobic001G408600--Sobic007G089800 Sobic001G004100 Sobic001G004100 Sobic001G408600--Sobic001G004100 Sobic006G125900 Sobic006G125900 Sobic001G408600--Sobic006G125900 Sobic009G211200 Sobic009G211200 Sobic001G408600--Sobic009G211200 Sobic006G002800 Sobic006G002800 Sobic001G408600--Sobic006G002800 Sobic001G145400 Sobic001G145400 Sobic001G408600--Sobic001G145400 Sobic003G246000--Sobic001G085800 Sobic003G246000--Sobic001G408600 Sobic004G141800 Sobic004G141800 Sobic003G246000--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic003G246000--Sobic002G430300 Sobic003G246000--Sobic001G145400 Sobic002G386600 Sobic002G386600 Sobic003G246000--Sobic002G386600 Sobic003G246000--Sobic006G125900 Sobic002G160700 Sobic002G160700 Sobic003G246000--Sobic002G160700 Sobic005G199200 Sobic005G199200 Sobic003G246000--Sobic005G199200 Sobic001G085800--Sobic003G246000 Sobic005G115500 Sobic005G115500 Sobic001G085800--Sobic005G115500 Sobic002G364900 Sobic002G364900 Sobic001G085800--Sobic002G364900 Sobic001G085800--Sobic002G160700 Sobic002G145800 Sobic002G145800 Sobic001G085800--Sobic002G145800 Sobic006G058800 Sobic006G058800 Sobic001G085800--Sobic006G058800 Sobic001G085800--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic001G085800--Sobic004G356200 Sobic001G469200 Sobic001G469200 Sobic001G085800--Sobic001G469200 Sobic007G041300 Sobic007G041300 Sobic007G102700--Sobic007G041300 Sobic004G156800 Sobic004G156800 Sobic007G102700--Sobic004G156800 Sobic010G237900 Sobic010G237900 Sobic007G102700--Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic007G102700--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic007G102700--Sobic007G191700 Sobic001G244300 Sobic001G244300 Sobic007G102700--Sobic001G244300 Sobic001G473600 Sobic001G473600 Sobic007G102700--Sobic001G473600 Sobic010G186600 Sobic010G186600 Sobic007G102700--Sobic010G186600 Sobic001G114500 Sobic001G114500 Sobic007G102700--Sobic001G114500 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic004G340400 Sobic004G340400 Sobic001G401500--Sobic004G340400 Sobic001G259000 Sobic001G259000 Sobic001G401500--Sobic001G259000 Sobic010G007100 Sobic010G007100 Sobic001G401500--Sobic010G007100 Sobic001G401500--Sobic009G211200 Sobic001G401500--Sobic001G244300 Sobic006G193300 Sobic006G193300 Sobic001G401500--Sobic006G193300 Sobic009G101200 Sobic009G101200 Sobic001G401500--Sobic009G101200 Sobic010G055700 Sobic010G055700 Sobic001G401500--Sobic010G055700 Sobic006G086600 Sobic006G086600 Sobic001G401500--Sobic006G086600 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic003G132000 Sobic003G132000 Sobic006G270600--Sobic003G132000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic006G270600--Sobic001G114500 Sobic002G005000--Sobic001G373000 Sobic002G005000--Sobic010G186600 Sobic001G291800 Sobic001G291800 Sobic002G005000--Sobic001G291800 Sobic002G005000--Sobic001G023800 Sobic001G052400 Sobic001G052400 Sobic002G005000--Sobic001G052400 Sobic004G307500 Sobic004G307500 Sobic002G005000--Sobic004G307500 Sobic002G005000--Sobic008G147200 Sobic002G005000--Sobic004G340400 Sobic002G005000--Sobic001G013300 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800
Octagon: transcription factors


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