Gene annotation
Transcriptome id Sobic.010G138700.1
Synonym Sb10g014210
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A194YJ33
Pfam PF13812 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF837
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13650 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g29800.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a042843
Brachypodium KQK18417
Barley HORVU2Hr1G038110.6
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G204100 expressed protein -
2 Sobic.009G160700 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
3 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
4 Sobic.010G147500 tryptophan biosynthesis protein trpCF, putative, expressed K01817: phosphoribosylanthranilate isomerase
5 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.010G123100 transporter-related, putative, expressed -
7 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
8 Sobic.001G478900 pentatricopeptide, putative, expressed -
9 Sobic.004G215600 - K15271: HFM1, ATP-dependent DNA helicase HFM1/MER3
10 Sobic.003G354500 methyltransferase, putative, expressed -
11 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
12 Sobic.007G102000 formin-like protein 13, putative, expressed -
13 Sobic.008G085950 - -
14 Sobic.001G534466 - -
15 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
16 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
17 Sobic.010G013600 syntaxin, putative, expressed K08489: syntaxin 16
18 Sobic.006G219801 - -
19 Sobic.002G390800 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
20 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic010G138700 Sobic010G138700 Sobic003G204100 Sobic003G204100 Sobic010G138700--Sobic003G204100 Sobic009G160700 Sobic009G160700 Sobic010G138700--Sobic009G160700 Sobic008G095900 Sobic008G095900 Sobic010G138700--Sobic008G095900 Sobic010G147500 Sobic010G147500 Sobic010G138700--Sobic010G147500 Sobic008G047500 Sobic008G047500 Sobic010G138700--Sobic008G047500 Sobic010G123100 Sobic010G123100 Sobic010G138700--Sobic010G123100 Sobic010G038200 Sobic010G038200 Sobic010G138700--Sobic010G038200 Sobic001G478900 Sobic001G478900 Sobic010G138700--Sobic001G478900 Sobic004G215600 Sobic004G215600 Sobic010G138700--Sobic004G215600 Sobic003G204100--Sobic008G047500 Sobic003G194800 Sobic003G194800 Sobic003G204100--Sobic003G194800 Sobic003G045450 Sobic003G045450 Sobic003G204100--Sobic003G045450 Sobic004G298600 Sobic004G298600 Sobic003G204100--Sobic004G298600 Sobic008G085950 Sobic008G085950 Sobic003G204100--Sobic008G085950 Sobic002G173400 Sobic002G173400 Sobic003G204100--Sobic002G173400 Sobic010G143600 Sobic010G143600 Sobic003G204100--Sobic010G143600 Sobic001G117900 Sobic001G117900 Sobic003G204100--Sobic001G117900 Sobic007G102000 Sobic007G102000 Sobic003G204100--Sobic007G102000 Sobic002G362500 Sobic002G362500 Sobic009G160700--Sobic002G362500 Sobic009G025700 Sobic009G025700 Sobic009G160700--Sobic009G025700 Sobic009G163100 Sobic009G163100 Sobic009G160700--Sobic009G163100 Sobic008G156600 Sobic008G156600 Sobic009G160700--Sobic008G156600 Sobic001G322400 Sobic001G322400 Sobic009G160700--Sobic001G322400 Sobic003G013700 Sobic003G013700 Sobic009G160700--Sobic003G013700 Sobic001G072000 Sobic001G072000 Sobic009G160700--Sobic001G072000 Sobic003G057050 Sobic003G057050 Sobic009G160700--Sobic003G057050 Sobic009G042000 Sobic009G042000 Sobic009G160700--Sobic009G042000 Sobic004G194400 Sobic004G194400 Sobic008G095900--Sobic004G194400 Sobic001G308500 Sobic001G308500 Sobic008G095900--Sobic001G308500 Sobic004G051600 Sobic004G051600 Sobic008G095900--Sobic004G051600 Sobic008G095900--Sobic001G478900 Sobic008G095900--Sobic008G085950 Sobic006G191000 Sobic006G191000 Sobic008G095900--Sobic006G191000 Sobic010G086300 Sobic010G086300 Sobic008G095900--Sobic010G086300 Sobic006G071362 Sobic006G071362 Sobic008G095900--Sobic006G071362 Sobic003G004800 Sobic003G004800 Sobic008G095900--Sobic003G004800 Sobic010G147500--Sobic001G117900 Sobic001G529500 Sobic001G529500 Sobic010G147500--Sobic001G529500 Sobic010G188900 Sobic010G188900 Sobic010G147500--Sobic010G188900 Sobic002G308000 Sobic002G308000 Sobic010G147500--Sobic002G308000 Sobic001G440000 Sobic001G440000 Sobic010G147500--Sobic001G440000 Sobic010G147500--Sobic003G204100 Sobic006G095000 Sobic006G095000 Sobic010G147500--Sobic006G095000 Sobic001G248400 Sobic001G248400 Sobic010G147500--Sobic001G248400 Sobic010G147500--Sobic004G298600 Sobic008G047500--Sobic008G085950 Sobic008G047500--Sobic003G204100 Sobic008G047500--Sobic003G194800 Sobic008G047500--Sobic007G102000 Sobic002G390800 Sobic002G390800 Sobic008G047500--Sobic002G390800 Sobic008G047500--Sobic002G173400 Sobic008G047500--Sobic004G298600 Sobic007G105700 Sobic007G105700 Sobic008G047500--Sobic007G105700 Sobic010G009700 Sobic010G009700 Sobic008G047500--Sobic010G009700 Sobic004G353300 Sobic004G353300 Sobic010G123100--Sobic004G353300 Sobic010G123100--Sobic004G298600 Sobic010G274800 Sobic010G274800 Sobic010G123100--Sobic010G274800 Sobic010G123100--Sobic008G095900 Sobic010G123100--Sobic001G308500 Sobic001G385300 Sobic001G385300 Sobic010G123100--Sobic001G385300 Sobic010G123100--Sobic008G085950 Sobic010G123100--Sobic007G105700 Sobic006G265800 Sobic006G265800 Sobic010G123100--Sobic006G265800 Sobic009G136000 Sobic009G136000 Sobic010G038200--Sobic009G136000 Sobic010G030000 Sobic010G030000 Sobic010G038200--Sobic010G030000 Sobic010G038200--Sobic010G009700 Sobic008G131900 Sobic008G131900 Sobic010G038200--Sobic008G131900 Sobic010G038200--Sobic001G248400 Sobic005G060100 Sobic005G060100 Sobic010G038200--Sobic005G060100 Sobic009G214500 Sobic009G214500 Sobic010G038200--Sobic009G214500 Sobic003G216600 Sobic003G216600 Sobic010G038200--Sobic003G216600 Sobic002G052800 Sobic002G052800 Sobic010G038200--Sobic002G052800 Sobic001G478900--Sobic008G095900 Sobic006G262800 Sobic006G262800 Sobic001G478900--Sobic006G262800 Sobic004G256900 Sobic004G256900 Sobic001G478900--Sobic004G256900 Sobic003G184300 Sobic003G184300 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic001G478900--Sobic004G051600 Sobic010G068900 Sobic010G068900 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic001G478900--Sobic010G123100 Sobic009G120400 Sobic009G120400 Sobic004G215600--Sobic009G120400 Sobic004G215600--Sobic003G194800 Sobic004G215600--Sobic008G047500 Sobic007G186400 Sobic007G186400 Sobic004G215600--Sobic007G186400 Sobic004G215600--Sobic008G095900 Sobic004G215600--Sobic006G095000 Sobic004G215600--Sobic008G085950 Sobic004G215600--Sobic002G173400 Sobic001G043200 Sobic001G043200 Sobic004G215600--Sobic001G043200
Octagon: transcription factors


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