Gene annotation
Transcriptome id Sobic.001G151300.1
Synonym Sb01g013130
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6QJ33
Pfam PF01535 PF14432 PF13041
Panther DB PTHR24015 PTHR24015:SF828
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41080 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g60200.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a007579
Brachypodium KQK10629
Barley HORVU3Hr1G085150.2 , HORVU3Hr1G085150.3 , HORVU3Hr1G071380.2 , HORVU3Hr1G071380.1 , HORVU3Hr1G085150.1
Wheat TraesCS3D02G360700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.001G149100 vegetative storage protein, putative, expressed -
3 Sobic.002G240900 pentatricopeptide, putative, expressed -
4 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.010G190900 pentatricopeptide, putative, expressed -
6 Sobic.008G041000 expressed protein -
7 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
8 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.006G069100 pentatricopeptide, putative, expressed -
10 Sobic.006G085900 pentatricopeptide, putative, expressed -
11 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
12 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
13 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
14 Sobic.006G089900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.002G110400 pentatricopeptide domain containing protein, putative, expressed -
16 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
17 Sobic.008G009300 pentatricopeptide, putative, expressed -
18 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
19 Sobic.008G149200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
20 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic001G151300 Sobic001G151300 Sobic002G084400 Sobic002G084400 Sobic001G151300--Sobic002G084400 Sobic001G149100 Sobic001G149100 Sobic001G151300--Sobic001G149100 Sobic002G240900 Sobic002G240900 Sobic001G151300--Sobic002G240900 Sobic004G241000 Sobic004G241000 Sobic001G151300--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic001G151300--Sobic010G190900 Sobic008G041000 Sobic008G041000 Sobic001G151300--Sobic008G041000 Sobic001G122200 Sobic001G122200 Sobic001G151300--Sobic001G122200 Sobic010G232700 Sobic010G232700 Sobic001G151300--Sobic010G232700 Sobic006G069100 Sobic006G069100 Sobic001G151300--Sobic006G069100 Sobic002G084400--Sobic010G232700 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic010G252700 Sobic010G252700 Sobic001G149100--Sobic010G252700 Sobic008G179000 Sobic008G179000 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic008G163400 Sobic008G163400 Sobic001G149100--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic002G267600 Sobic002G267600 Sobic001G149100--Sobic002G267600 Sobic002G240900--Sobic001G149100 Sobic003G419800 Sobic003G419800 Sobic002G240900--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic002G240900--Sobic002G389200 Sobic003G014766 Sobic003G014766 Sobic002G240900--Sobic003G014766 Sobic005G059400 Sobic005G059400 Sobic002G240900--Sobic005G059400 Sobic003G051500 Sobic003G051500 Sobic002G240900--Sobic003G051500 Sobic001G001200 Sobic001G001200 Sobic002G240900--Sobic001G001200 Sobic002G240900--Sobic005G028300 Sobic001G390900 Sobic001G390900 Sobic002G240900--Sobic001G390900 Sobic004G241000--Sobic008G163400 Sobic004G256900 Sobic004G256900 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic010G068900 Sobic010G068900 Sobic004G241000--Sobic010G068900 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic002G172500 Sobic002G172500 Sobic004G241000--Sobic002G172500 Sobic009G155400 Sobic009G155400 Sobic004G241000--Sobic009G155400 Sobic010G190900--Sobic010G068900 Sobic010G190900--Sobic004G241000 Sobic010G190900--Sobic006G069100 Sobic010G190900--Sobic004G256900 Sobic009G253101 Sobic009G253101 Sobic010G190900--Sobic009G253101 Sobic009G116400 Sobic009G116400 Sobic010G190900--Sobic009G116400 Sobic010G190900--Sobic009G155400 Sobic007G087900 Sobic007G087900 Sobic010G190900--Sobic007G087900 Sobic010G190900--Sobic002G172500 Sobic008G041000--Sobic002G084400 Sobic008G041000--Sobic010G232700 Sobic008G041000--Sobic006G085900 Sobic003G203100 Sobic003G203100 Sobic008G041000--Sobic003G203100 Sobic008G041000--Sobic005G028300 Sobic008G041000--Sobic002G251800 Sobic008G041000--Sobic002G389200 Sobic009G134400 Sobic009G134400 Sobic008G041000--Sobic009G134400 Sobic008G041000--Sobic006G069100 Sobic001G122200--Sobic008G163400 Sobic001G122200--Sobic010G068900 Sobic004G282500 Sobic004G282500 Sobic001G122200--Sobic004G282500 Sobic001G122200--Sobic004G241000 Sobic006G262800 Sobic006G262800 Sobic001G122200--Sobic006G262800 Sobic001G268300 Sobic001G268300 Sobic001G122200--Sobic001G268300 Sobic001G396800 Sobic001G396800 Sobic001G122200--Sobic001G396800 Sobic001G122200--Sobic006G069100 Sobic001G122200--Sobic001G149100 Sobic010G232700--Sobic002G084400 Sobic010G232700--Sobic008G041000 Sobic010G232700--Sobic006G085900 Sobic010G232700--Sobic008G171500 Sobic010G232700--Sobic003G203100 Sobic010G232700--Sobic004G241000 Sobic010G232700--Sobic006G069100 Sobic010G232700--Sobic005G028300 Sobic010G232700--Sobic004G256900 Sobic006G069100--Sobic004G241000 Sobic006G069100--Sobic004G256900 Sobic006G069100--Sobic010G068900 Sobic006G069100--Sobic010G190900 Sobic006G069100--Sobic006G085900 Sobic006G069100--Sobic009G155400 Sobic006G069100--Sobic008G163400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100
Octagon: transcription factors


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