Gene annotation
Transcriptome id Sobic.004G116800.2,Sobic.004G116800.1
Synonym Sb04g009730
Functional annotation harpin-induced protein 1 domain containing protein, expressed
UniProt A0A1Z5RLX3 , C5XZI1
Pfam -
Panther DB PTHR31234 PTHR31234:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27080 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os02g16030.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019882 , Zm00025a034383
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G116800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G208600 receptor kinase like protein, putative, expressed -
2 Sobic.003G371400 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
3 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.002G030800 app1, putative, expressed -
5 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
6 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
7 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.009G221900 seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
10 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
11 Sobic.002G030650 - -
12 Sobic.005G145100 phospholipase A2, putative, expressed -
13 Sobic.001G250100 thaumatin, putative, expressed -
14 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
15 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
16 Sobic.002G050100 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.010G093300 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.001G059500 LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
20 Sobic.006G160900 NAC domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G116800 Sobic004G116800 Sobic001G208600 Sobic001G208600 Sobic004G116800--Sobic001G208600 Sobic003G371400 Sobic003G371400 Sobic004G116800--Sobic003G371400 Sobic005G127200 Sobic005G127200 Sobic004G116800--Sobic005G127200 Sobic002G030800 Sobic002G030800 Sobic004G116800--Sobic002G030800 Sobic003G239100 Sobic003G239100 Sobic004G116800--Sobic003G239100 Sobic003G352700 Sobic003G352700 Sobic004G116800--Sobic003G352700 Sobic004G266700 Sobic004G266700 Sobic004G116800--Sobic004G266700 Sobic009G221900 Sobic009G221900 Sobic004G116800--Sobic009G221900 Sobic005G112000 Sobic005G112000 Sobic004G116800--Sobic005G112000 Sobic005G145100 Sobic005G145100 Sobic001G208600--Sobic005G145100 Sobic003G099166 Sobic003G099166 Sobic001G208600--Sobic003G099166 Sobic006G075000 Sobic006G075000 Sobic001G208600--Sobic006G075000 Sobic001G208600--Sobic003G239100 Sobic009G017500 Sobic009G017500 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic001G208600--Sobic002G030800 Sobic001G208600--Sobic003G352700 Sobic003G371400--Sobic005G112000 Sobic001G343400 Sobic001G343400 Sobic003G371400--Sobic001G343400 Sobic008G055800 Sobic008G055800 Sobic003G371400--Sobic008G055800 Sobic003G371400--Sobic009G221900 Sobic003G082700 Sobic003G082700 Sobic003G371400--Sobic003G082700 Sobic003G371400--Sobic001G208600 Sobic003G378800 Sobic003G378800 Sobic003G371400--Sobic003G378800 Sobic003G371400--Sobic003G099166 Sobic002G083600 Sobic002G083600 Sobic003G371400--Sobic002G083600 Sobic010G093300 Sobic010G093300 Sobic005G127200--Sobic010G093300 Sobic005G127200--Sobic004G266700 Sobic001G068500 Sobic001G068500 Sobic005G127200--Sobic001G068500 Sobic005G127200--Sobic002G030800 Sobic003G341500 Sobic003G341500 Sobic005G127200--Sobic003G341500 Sobic001G059600 Sobic001G059600 Sobic005G127200--Sobic001G059600 Sobic002G030650 Sobic002G030650 Sobic005G127200--Sobic002G030650 Sobic001G413700 Sobic001G413700 Sobic005G127200--Sobic001G413700 Sobic003G368100 Sobic003G368100 Sobic005G127200--Sobic003G368100 Sobic002G030800--Sobic005G127200 Sobic002G030800--Sobic010G093300 Sobic002G030800--Sobic001G068500 Sobic001G471800 Sobic001G471800 Sobic002G030800--Sobic001G471800 Sobic002G030800--Sobic001G413700 Sobic001G250100 Sobic001G250100 Sobic002G030800--Sobic001G250100 Sobic002G030800--Sobic003G239100 Sobic002G030800--Sobic001G059600 Sobic006G224500 Sobic006G224500 Sobic002G030800--Sobic006G224500 Sobic003G239100--Sobic003G082700 Sobic009G008800 Sobic009G008800 Sobic003G239100--Sobic009G008800 Sobic003G239100--Sobic003G352700 Sobic003G239100--Sobic005G145100 Sobic003G239100--Sobic004G266700 Sobic003G239100--Sobic005G127200 Sobic003G239100--Sobic002G053900 Sobic003G239100--Sobic002G030800 Sobic001G484000 Sobic001G484000 Sobic003G239100--Sobic001G484000 Sobic003G352700--Sobic003G082700 Sobic004G047600 Sobic004G047600 Sobic003G352700--Sobic004G047600 Sobic003G352700--Sobic009G008800 Sobic003G352700--Sobic003G239100 Sobic003G352700--Sobic001G068500 Sobic003G352700--Sobic001G484000 Sobic001G059500 Sobic001G059500 Sobic003G352700--Sobic001G059500 Sobic003G352700--Sobic005G127200 Sobic007G047300 Sobic007G047300 Sobic003G352700--Sobic007G047300 Sobic004G266700--Sobic005G127200 Sobic004G266700--Sobic003G341500 Sobic001G144800 Sobic001G144800 Sobic004G266700--Sobic001G144800 Sobic004G266700--Sobic001G068500 Sobic004G266700--Sobic010G093300 Sobic004G266700--Sobic009G008800 Sobic004G266700--Sobic003G368100 Sobic004G266700--Sobic003G239100 Sobic004G266700--Sobic001G059600 Sobic001G263900 Sobic001G263900 Sobic009G221900--Sobic001G263900 Sobic002G347300 Sobic002G347300 Sobic009G221900--Sobic002G347300 Sobic009G221900--Sobic009G017500 Sobic009G221900--Sobic003G099166 Sobic009G221900--Sobic003G371400 Sobic008G091557 Sobic008G091557 Sobic009G221900--Sobic008G091557 Sobic009G221900--Sobic001G208600 Sobic009G221900--Sobic002G030800 Sobic002G207000 Sobic002G207000 Sobic009G221900--Sobic002G207000 Sobic005G112000--Sobic003G371400 Sobic005G112000--Sobic003G082700 Sobic001G388000 Sobic001G388000 Sobic005G112000--Sobic001G388000 Sobic010G133932 Sobic010G133932 Sobic005G112000--Sobic010G133932 Sobic003G270400 Sobic003G270400 Sobic005G112000--Sobic003G270400 Sobic003G366300 Sobic003G366300 Sobic005G112000--Sobic003G366300 Sobic005G112000--Sobic001G208600 Sobic010G007000 Sobic010G007000 Sobic005G112000--Sobic010G007000 Sobic006G160900 Sobic006G160900 Sobic005G112000--Sobic006G160900
Octagon: transcription factors


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