Gene annotation
Transcriptome id Sobic.003G238600.1
Synonym Sb03g029580
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
GDSL-like lipase/acylhydrolase, putative, expressed
UniProt C5XF71
Pfam PF00657
Panther DB PTHR22835 PTHR22835:SF209
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT1G28600 : GDSL-like Lipase/Acylhydrolase superfamily protein
RAP-DB (Rice) LOC_Os01g46080.1 : GDSL-like lipase/acylhydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a028238 , Zm00025a028239 , Zm00025a028240
Brachypodium PNT72500
Barley HORVU3Hr1G058440.12 , HORVU3Hr1G058440.13 , HORVU3Hr1G058440.10 , HORVU3Hr1G058440.11 , HORVU3Hr1G058440.16 , HORVU3Hr1G058440.17 , HORVU3Hr1G058440.14 , HORVU3Hr1G058440.8 , HORVU3Hr1G058440.9 , HORVU3Hr1G058440.1 , HORVU3Hr1G058440.2 , HORVU3Hr1G058440.3 , HORVU3Hr1G058440.4 , HORVU3Hr1G058440.5 , HORVU3Hr1G058440.6 , HORVU3Hr1G058440.7 , HORVU3Hr1G058440.20 , HORVU3Hr1G008280.1
Wheat TraesCS3D02G236100 , TraesCS3A02G235000 , TraesCS3B02G264800 , TraesCS3D02G236000 , TraesCS3D02G236000 , TraesCS3B02G264900 , TraesCS3A02G234900 , TraesCS3D02G050700 , TraesCS3D02G050700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
2 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
3 Sobic.001G250100 thaumatin, putative, expressed -
4 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
5 Sobic.001G163800 No apical meristem protein, putative, expressed -
6 Sobic.009G122300 white-brown complex homolog protein 16, putative, expressed -
7 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
8 Sobic.007G109600 expressed protein -
9 Sobic.003G287200 WRKY23, expressed -
10 Sobic.004G034200 STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed -
11 Sobic.006G183900 cytochrome P450, putative, expressed -
12 Sobic.001G263900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
13 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
14 Sobic.010G115700 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.009G221900 seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.007G141200 "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@"coniferylaldehyde dehydrogenase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Higher affinity for caffeoyl-CoA or p-coumaroyl-CoA than for feruloyl-CoA, but significantly higher activity for the latter substrate, "(PubMedID : 27956488)@cinnamoyl-CoA reductase, putative, expressed K09753: cinnamoyl-CoA reductase
17 Sobic.002G365550 - -
18 Sobic.005G096101 - -
19 Sobic.005G107500 peptide transporter PTR2, putative, expressed -
20 Sobic.003G100900 - -


Gene co-expression network
sample Sobic003G238600 Sobic003G238600 Sobic009G017500 Sobic009G017500 Sobic003G238600--Sobic009G017500 Sobic002G365500 Sobic002G365500 Sobic003G238600--Sobic002G365500 Sobic001G250100 Sobic001G250100 Sobic003G238600--Sobic001G250100 Sobic006G028400 Sobic006G028400 Sobic003G238600--Sobic006G028400 Sobic001G163800 Sobic001G163800 Sobic003G238600--Sobic001G163800 Sobic009G122300 Sobic009G122300 Sobic003G238600--Sobic009G122300 Sobic001G002800 Sobic001G002800 Sobic003G238600--Sobic001G002800 Sobic007G109600 Sobic007G109600 Sobic003G238600--Sobic007G109600 Sobic003G287200 Sobic003G287200 Sobic003G238600--Sobic003G287200 Sobic001G208600 Sobic001G208600 Sobic009G017500--Sobic001G208600 Sobic001G263900 Sobic001G263900 Sobic009G017500--Sobic001G263900 Sobic009G221900 Sobic009G221900 Sobic009G017500--Sobic009G221900 Sobic002G030800 Sobic002G030800 Sobic009G017500--Sobic002G030800 Sobic008G072600 Sobic008G072600 Sobic009G017500--Sobic008G072600 Sobic010G096100 Sobic010G096100 Sobic009G017500--Sobic010G096100 Sobic006G075000 Sobic006G075000 Sobic009G017500--Sobic006G075000 Sobic003G099166 Sobic003G099166 Sobic009G017500--Sobic003G099166 Sobic009G017500--Sobic003G238600 Sobic002G365550 Sobic002G365550 Sobic002G365500--Sobic002G365550 Sobic002G365600 Sobic002G365600 Sobic002G365500--Sobic002G365600 Sobic010G115700 Sobic010G115700 Sobic002G365500--Sobic010G115700 Sobic002G365801 Sobic002G365801 Sobic002G365500--Sobic002G365801 Sobic004G071000 Sobic004G071000 Sobic002G365500--Sobic004G071000 Sobic002G368300 Sobic002G368300 Sobic002G365500--Sobic002G368300 Sobic006G183900 Sobic006G183900 Sobic002G365500--Sobic006G183900 Sobic002G365500--Sobic006G028400 Sobic003G269500 Sobic003G269500 Sobic002G365500--Sobic003G269500 Sobic001G059600 Sobic001G059600 Sobic001G250100--Sobic001G059600 Sobic006G160900 Sobic006G160900 Sobic001G250100--Sobic006G160900 Sobic001G471800 Sobic001G471800 Sobic001G250100--Sobic001G471800 Sobic009G008800 Sobic009G008800 Sobic001G250100--Sobic009G008800 Sobic001G250100--Sobic002G030800 Sobic010G014400 Sobic010G014400 Sobic001G250100--Sobic010G014400 Sobic003G183300 Sobic003G183300 Sobic001G250100--Sobic003G183300 Sobic001G250100--Sobic001G163800 Sobic004G193500 Sobic004G193500 Sobic001G250100--Sobic004G193500 Sobic006G028400--Sobic006G183900 Sobic003G203600 Sobic003G203600 Sobic006G028400--Sobic003G203600 Sobic007G170300 Sobic007G170300 Sobic006G028400--Sobic007G170300 Sobic006G028400--Sobic007G109600 Sobic007G178900 Sobic007G178900 Sobic006G028400--Sobic007G178900 Sobic002G185800 Sobic002G185800 Sobic006G028400--Sobic002G185800 Sobic006G028400--Sobic002G365500 Sobic006G028400--Sobic004G071000 Sobic006G028400--Sobic002G365550 Sobic005G022500 Sobic005G022500 Sobic001G163800--Sobic005G022500 Sobic001G163800--Sobic004G193500 Sobic001G163800--Sobic001G250100 Sobic001G163800--Sobic003G287200 Sobic008G133000 Sobic008G133000 Sobic001G163800--Sobic008G133000 Sobic001G163800--Sobic001G002800 Sobic001G503000 Sobic001G503000 Sobic001G163800--Sobic001G503000 Sobic001G163800--Sobic001G471800 Sobic009G250100 Sobic009G250100 Sobic001G163800--Sobic009G250100 Sobic009G122300--Sobic007G109600 Sobic009G122300--Sobic008G133000 Sobic004G248500 Sobic004G248500 Sobic009G122300--Sobic004G248500 Sobic001G308100 Sobic001G308100 Sobic009G122300--Sobic001G308100 Sobic001G055400 Sobic001G055400 Sobic009G122300--Sobic001G055400 Sobic009G122300--Sobic006G183900 Sobic009G122300--Sobic006G028400 Sobic010G096400 Sobic010G096400 Sobic009G122300--Sobic010G096400 Sobic009G122300--Sobic001G263900 Sobic002G254900 Sobic002G254900 Sobic001G002800--Sobic002G254900 Sobic001G002800--Sobic001G503000 Sobic007G090472 Sobic007G090472 Sobic001G002800--Sobic007G090472 Sobic001G002800--Sobic003G287200 Sobic005G107500 Sobic005G107500 Sobic001G002800--Sobic005G107500 Sobic006G209000 Sobic006G209000 Sobic001G002800--Sobic006G209000 Sobic010G096700 Sobic010G096700 Sobic001G002800--Sobic010G096700 Sobic007G073000 Sobic007G073000 Sobic001G002800--Sobic007G073000 Sobic001G506600 Sobic001G506600 Sobic001G002800--Sobic001G506600 Sobic007G109600--Sobic006G183900 Sobic007G109600--Sobic004G248500 Sobic007G109600--Sobic006G028400 Sobic005G097600 Sobic005G097600 Sobic007G109600--Sobic005G097600 Sobic001G212451 Sobic001G212451 Sobic007G109600--Sobic001G212451 Sobic007G109600--Sobic002G365500 Sobic007G109600--Sobic002G365600 Sobic008G034700 Sobic008G034700 Sobic007G109600--Sobic008G034700 Sobic003G269600 Sobic003G269600 Sobic007G109600--Sobic003G269600 Sobic003G287200--Sobic006G183900 Sobic006G229100 Sobic006G229100 Sobic003G287200--Sobic006G229100 Sobic003G287200--Sobic001G002800 Sobic001G360500 Sobic001G360500 Sobic003G287200--Sobic001G360500 Sobic003G287200--Sobic001G503000 Sobic003G287200--Sobic007G090472 Sobic003G287200--Sobic010G096700 Sobic003G287200--Sobic007G170300 Sobic006G117500 Sobic006G117500 Sobic003G287200--Sobic006G117500
Octagon: transcription factors


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