Gene annotation
Transcriptome id Sobic.007G141200.1
Synonym IRX4, SbCCR1;CALD;CALD;Cinnamoyl-coenzyme A reductase, SbCCR1, CCR1, Sb07g021680, ATCCR1
Functional annotation "Localized in cytoplasm, involved in the process of drought defense" (PubMedID : 27231650)
"coniferylaldehyde dehydrogenase, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
"Higher affinity for caffeoyl-CoA or p-coumaroyl-CoA than for feruloyl-CoA, but significantly higher activity for the latter substrate, " (PubMedID : 27956488)
cinnamoyl-CoA reductase, putative, expressed
UniProt C5YLL4
Pfam PF01370
Panther DB PTHR10366:SF404 PTHR10366
NCBI CDD KOG1502; Flavonol reductase/cinnamoyl-CoA reductase
KEGG Orthology K09753; cinnamoyl-CoA reductase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G15950 : cinnamoyl coa reductase 1
RAP-DB (Rice) LOC_Os08g34280.1 : cinnamoyl-CoA reductase, putative, expressed
MaizeGDB (Corn) Zm00025a049770 , Zm00025a042110 , Zm00025a047474 , Zm00025a031161 , Zm00025a005845 , Zm00025a045929
Brachypodium KQK19267 , KQK19266 , KQJ98430
Barley HORVU5Hr1G065330.6 , HORVU7Hr1G022220.5 , HORVU7Hr1G022220.4 , HORVU7Hr1G022220.6 , HORVU7Hr1G022220.1 , HORVU7Hr1G022220.3 , HORVU7Hr1G022220.2 , HORVU5Hr1G050940.3 , HORVU5Hr1G050940.1 , HORVU5Hr1G050940.6 , HORVU5Hr1G050940.5 , HORVU5Hr1G050940.4 , HORVU0Hr1G013070.10 , HORVU5Hr1G073870.4 , HORVU5Hr1G073870.5 , HORVU5Hr1G073870.1 , HORVU5Hr1G073870.3 , HORVU5Hr1G065330.12 , HORVU5Hr1G065330.13 , HORVU5Hr1G065330.10 , HORVU5Hr1G065330.11 , HORVU5Hr1G065330.14 , HORVU0Hr1G013060.1 , HORVU0Hr1G013060.2 , HORVU0Hr1G013070.7 , HORVU0Hr1G013070.6 , HORVU0Hr1G013070.5 , HORVU0Hr1G013070.4 , HORVU0Hr1G013070.3 , HORVU0Hr1G013070.2 , HORVU0Hr1G013070.1 , HORVU0Hr1G013070.9 , HORVU0Hr1G013070.8 , HORVU5Hr1G065330.8 , HORVU5Hr1G065330.9 , HORVU5Hr1G065330.1 , HORVU5Hr1G065330.2 , HORVU5Hr1G065330.3 , HORVU5Hr1G065330.4 , HORVU5Hr1G065330.5 , HORVU5Hr1G065330.7
Wheat TraesCS7B02G052600 , TraesCS7B02G052700 , TraesCS7B02G052700 , TraesCS7B02G052700 , TraesCS5D02G276800 , TraesCS5B02G269000 , TraesCS5A02G163400 , TraesCS6B02G175600 , TraesCS6B02G175600 , TraesCS5B02G268700 , TraesCS5B02G268700 , TraesCS5A02G268200 , TraesCS5B02G223700 , TraesCS5B02G223700 , TraesCS5A02G268300 , TraesCS5A02G268300 , TraesCS1A02G436600 , TraesCS7D02G150500 , TraesCS5A02G268700 , TraesCS5A02G268700 , TraesCS5D02G276900 , TraesCS7D02G150600 , TraesCS6A02G147300 , TraesCS5D02G276500 , TraesCS5D02G232400 , TraesCS1A02G436500 , TraesCS6A02G381700 , TraesCS5B02G269100 , TraesCS7A02G149000 , TraesCS5A02G225100 , TraesCS5A02G225100 , TraesCS5A02G225100 , TraesCS5D02G168400 , TraesCS5D02G276300 , TraesCS6D02G136600 , TraesCS6D02G136600 , TraesCS6D02G136600
Populus -


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cDNA sequences
Sobic.007G141200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G238600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.010G115700 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
4 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
5 Sobic.010G162400 reticuline oxidase-like protein precursor, putative, expressed -
6 Sobic.002G244300 fasciclin domain containing protein, expressed -
7 Sobic.002G409000 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.002G365801 - -
9 Sobic.002G415000 POEI49 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
10 Sobic.010G115600 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
11 Sobic.002G365550 - -
12 Sobic.010G143900 glycosyltransferase protein, putative, expressed -
13 Sobic.003G368100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
14 Sobic.005G096101 - -
15 Sobic.002G368300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed -
16 Sobic.007G090436 - K08235: xyloglucan:xyloglucosyl transferase
17 Sobic.001G059600 LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.005G061200 dirigent, putative, expressed -
19 Sobic.003G305700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G141200 Sobic007G141200 Sobic003G238600 Sobic003G238600 Sobic007G141200--Sobic003G238600 Sobic010G115700 Sobic010G115700 Sobic007G141200--Sobic010G115700 Sobic002G365500 Sobic002G365500 Sobic007G141200--Sobic002G365500 Sobic004G071000 Sobic004G071000 Sobic007G141200--Sobic004G071000 Sobic010G162400 Sobic010G162400 Sobic007G141200--Sobic010G162400 Sobic002G244300 Sobic002G244300 Sobic007G141200--Sobic002G244300 Sobic002G409000 Sobic002G409000 Sobic007G141200--Sobic002G409000 Sobic002G365801 Sobic002G365801 Sobic007G141200--Sobic002G365801 Sobic002G415000 Sobic002G415000 Sobic007G141200--Sobic002G415000 Sobic009G017500 Sobic009G017500 Sobic003G238600--Sobic009G017500 Sobic003G238600--Sobic002G365500 Sobic001G250100 Sobic001G250100 Sobic003G238600--Sobic001G250100 Sobic006G028400 Sobic006G028400 Sobic003G238600--Sobic006G028400 Sobic001G163800 Sobic001G163800 Sobic003G238600--Sobic001G163800 Sobic009G122300 Sobic009G122300 Sobic003G238600--Sobic009G122300 Sobic001G002800 Sobic001G002800 Sobic003G238600--Sobic001G002800 Sobic007G109600 Sobic007G109600 Sobic003G238600--Sobic007G109600 Sobic003G287200 Sobic003G287200 Sobic003G238600--Sobic003G287200 Sobic010G115700--Sobic002G365801 Sobic002G365550 Sobic002G365550 Sobic010G115700--Sobic002G365550 Sobic010G115700--Sobic002G365500 Sobic010G115700--Sobic004G071000 Sobic010G096400 Sobic010G096400 Sobic010G115700--Sobic010G096400 Sobic002G365600 Sobic002G365600 Sobic010G115700--Sobic002G365600 Sobic002G368300 Sobic002G368300 Sobic010G115700--Sobic002G368300 Sobic007G178900 Sobic007G178900 Sobic010G115700--Sobic007G178900 Sobic009G088900 Sobic009G088900 Sobic010G115700--Sobic009G088900 Sobic002G365500--Sobic002G365550 Sobic002G365500--Sobic002G365600 Sobic002G365500--Sobic010G115700 Sobic002G365500--Sobic002G365801 Sobic002G365500--Sobic004G071000 Sobic002G365500--Sobic002G368300 Sobic006G183900 Sobic006G183900 Sobic002G365500--Sobic006G183900 Sobic002G365500--Sobic006G028400 Sobic003G269500 Sobic003G269500 Sobic002G365500--Sobic003G269500 Sobic004G071000--Sobic002G365801 Sobic004G071000--Sobic002G365550 Sobic004G071000--Sobic002G368300 Sobic004G071000--Sobic002G365500 Sobic008G055100 Sobic008G055100 Sobic004G071000--Sobic008G055100 Sobic004G071000--Sobic010G115700 Sobic010G212500 Sobic010G212500 Sobic004G071000--Sobic010G212500 Sobic004G071000--Sobic002G365600 Sobic003G053400 Sobic003G053400 Sobic004G071000--Sobic003G053400 Sobic001G170700 Sobic001G170700 Sobic010G162400--Sobic001G170700 Sobic004G147400 Sobic004G147400 Sobic010G162400--Sobic004G147400 Sobic001G161601 Sobic001G161601 Sobic010G162400--Sobic001G161601 Sobic009G253300 Sobic009G253300 Sobic010G162400--Sobic009G253300 Sobic010G162400--Sobic007G141200 Sobic010G162400--Sobic002G244300 Sobic001G012400 Sobic001G012400 Sobic010G162400--Sobic001G012400 Sobic001G012500 Sobic001G012500 Sobic010G162400--Sobic001G012500 Sobic002G347300 Sobic002G347300 Sobic010G162400--Sobic002G347300 Sobic003G368100 Sobic003G368100 Sobic002G244300--Sobic003G368100 Sobic003G206700 Sobic003G206700 Sobic002G244300--Sobic003G206700 Sobic009G008800 Sobic009G008800 Sobic002G244300--Sobic009G008800 Sobic002G244300--Sobic009G088900 Sobic001G046800 Sobic001G046800 Sobic002G244300--Sobic001G046800 Sobic010G083400 Sobic010G083400 Sobic002G244300--Sobic010G083400 Sobic001G261460 Sobic001G261460 Sobic002G244300--Sobic001G261460 Sobic010G047600 Sobic010G047600 Sobic002G244300--Sobic010G047600 Sobic002G244300--Sobic008G055100 Sobic001G413700 Sobic001G413700 Sobic002G409000--Sobic001G413700 Sobic002G409000--Sobic003G368100 Sobic010G093300 Sobic010G093300 Sobic002G409000--Sobic010G093300 Sobic002G409000--Sobic010G115700 Sobic001G068500 Sobic001G068500 Sobic002G409000--Sobic001G068500 Sobic005G069500 Sobic005G069500 Sobic002G409000--Sobic005G069500 Sobic001G059600 Sobic001G059600 Sobic002G409000--Sobic001G059600 Sobic002G409000--Sobic002G365801 Sobic006G224500 Sobic006G224500 Sobic002G409000--Sobic006G224500 Sobic002G365801--Sobic002G365550 Sobic002G365801--Sobic004G071000 Sobic002G365801--Sobic010G115700 Sobic002G365801--Sobic010G212500 Sobic002G365801--Sobic002G368300 Sobic002G365801--Sobic002G365500 Sobic002G365801--Sobic010G096400 Sobic001G379400 Sobic001G379400 Sobic002G365801--Sobic001G379400 Sobic002G365801--Sobic009G088900 Sobic003G157700 Sobic003G157700 Sobic002G415000--Sobic003G157700 Sobic003G384700 Sobic003G384700 Sobic002G415000--Sobic003G384700 Sobic009G074500 Sobic009G074500 Sobic002G415000--Sobic009G074500 Sobic010G113100 Sobic010G113100 Sobic002G415000--Sobic010G113100 Sobic002G101400 Sobic002G101400 Sobic002G415000--Sobic002G101400 Sobic003G128800 Sobic003G128800 Sobic002G415000--Sobic003G128800 Sobic005G061200 Sobic005G061200 Sobic002G415000--Sobic005G061200 Sobic002G042200 Sobic002G042200 Sobic002G415000--Sobic002G042200 Sobic004G009500 Sobic004G009500 Sobic002G415000--Sobic004G009500
Octagon: transcription factors


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